RchiOBHm_Chr1g0334561

iron ion binding

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
26717567 .. 26717809
243 bp
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UTR
Exon/CDS
Intron
PRQ56328

Sequence Viewer

Length: 243 bp
ATGGTGCCCCTAATGCTTCAAATTCATAATGTTCCTTCCCTTCCTCTCTATACTTCTCTGATTGCGCTAGTTATCCTAGTTCTATATCGGAAGAGATTGAAAAGCAGCCATACCTCAAGTCTTAGTCTGCCTCCAGGTCCGCGGAAGCTACCCGTTATAGGAAACTTGCTTCAGTTGGTAGGCTCGCTACCACATCATTCTCTAAGAGACTTGGCCAAGAGGTATGGACCAATCATGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.87

Weight (kDa)

11.08

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 140, 142
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 20, 100
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 21
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 137, 227
AvaII GGWCC 2 cut(s) 137, 227
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 68, 77
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 2 cut(s) 137, 227
BmgT120I GGNCC 2 cut(s) 137, 227
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 9
BspACI CCGC 2 cut(s) 140, 142
BspANI GGCC 1 cut(s) 215
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 122, 203
BstDSI CCRYGG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 137, 227
Cfr42I CCGCGG 1 cut(s) 143
CviAII CATG 1 cut(s) 235
CviJI RGCY 4 cut(s) 108, 148, 183, 215
CviKI_1 RGCY 4 cut(s) 108, 148, 183, 215
DdeI CTNAG 2 cut(s) 122, 203
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 137, 227
Eco57I CTGAAG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 238
FaiI YATR 7 cut(s) 27, 51, 85, 111, 158, 225, 236
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 2 cut(s) 68, 77
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 215
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 60, 90
HpyAV CCTTC 2 cut(s) 45, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 122, 203
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 65
KspI CCGCGG 1 cut(s) 143
LpnPI CCDG 2 cut(s) 120, 147
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 2 cut(s) 68, 77
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 4 cut(s) 54, 124, 141, 213
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 13
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 137, 227
SacII CCGCGG 1 cut(s) 143
SatI GCNGC 1 cut(s) 106
Sau96I GGNCC 2 cut(s) 137, 227
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 9
SetI ASST 4 cut(s) 116, 139, 150, 224
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 2 cut(s) 137, 227
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 21
SsiI CCGC 2 cut(s) 140, 142
SspMI CTAG 2 cut(s) 68, 77
StyD4I CCNGG 1 cut(s) 133
TasI AATT 1 cut(s) 21
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 137, 227
XapI RAATTY 1 cut(s) 21
XspI CTAG 2 cut(s) 68, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.