RchiOBHm_Chr2g0175641

Premnaspirodiene oxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000132
Physical Location & Seq
Forward (+)
87742371 .. 87744889
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54270

Sequence Viewer

Length: 696 bp
ATGGAGCAGGGAGCCATGGCCGACGCGGGGGCGCCGCCGGACAGGCAGATAACTTTTGACTTCTTTTCTGCGGGGAGTGAGACTTCAGCTACTACCACAGAATGGGCAATGTCGGAGTTGATGAGAAACCCTGAAGTGATGAAGAAGGCCCAAGCAGAGGTGCGCCAATTGTTAGTGAACCGCCTTGAAGGAAAGAAAAGAATTGAAGAAGCAGATGTTCAAACACTGGACTACTTGAAAGCAGTGGTGAAAGAAACTCTGCGACTTCACCCTACCATTCCTTTAATCCCAAGAGAAGCAAGGGAGAGATGCGAGATCAGTGGTTACCAAGTAGCAGTTAAGACAAAAGTGATTGTGAACGAGTGGGCAATGGGAAGAGATGCAGAGAATTGGGTTGACCCCGAGTCGTTTAAGCCAGAGAGGTTCCTCCATATCCATGGTGATAAAGTTAGTTCCAACAATATCGACTTCAAAGGGAGCAACTTTGAGTTCATTCCATTTGGGGCAGGTAGGAGAATATGTCCGGGCATATCATTTGCCACTGCAATGATTGAGCTTGCTCTTGCTCAGTTGCTCTATCATTTTGATTGGAAACTCCCCAGTGGAATCAAACCGGATGAGCTTGACATGTCGGAGACTTTCGGAGTAACCTGTAGGAGAAAAAATGATCTGTACTTGATTGCGACCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00591 ko01100 ko04212 ko04726 ko04750 ko04913 map00590 map00591 map01100 map04212 map04726 map04750 map04913
Pfam Domains
Protein Families
p450

Protein Analysis

231

Amino Acids

26.15

Weight (kDa)

5.64

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 16 - 221 1.4e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 31
AccB7I CCANNNNNTGG 1 cut(s) 102
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 26, 35, 71, 181
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 2 cut(s) 69, 153
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 27, 102, 157
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 5 cut(s) 188, 206, 221, 238, 472
AhdI GACNNNNNGTC 1 cut(s) 403
AluBI AGCT 3 cut(s) 89, 556, 622
AluI AGCT 3 cut(s) 89, 556, 622
Alw26I GTCTC 2 cut(s) 74, 629
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 2 cut(s) 18, 147
AspLEI GCGC 2 cut(s) 34, 165
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 3 cut(s) 259, 260, 452
AvaI CYCGRG 1 cut(s) 401
BanI GGYRCC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 74, 629
BfmI CTRYAG 1 cut(s) 652
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 525
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 13, 33, 425
BmrFI CCNGG 1 cut(s) 525
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 2 cut(s) 299, 370
BmuI ACTGGG 1 cut(s) 594
BpuMI CCSGG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 15, 436
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 102, 157
Bse1I ACTGG 2 cut(s) 231, 600
Bse3DI GCAATG 3 cut(s) 114, 375, 552
BseDI CCNNGG 2 cut(s) 15, 436
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 3 cut(s) 27, 102, 157
BseMI GCAATG 3 cut(s) 114, 375, 552
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 2 cut(s) 231, 600
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 20, 149
BshNI GGYRCC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 3 cut(s) 38, 524, 614
BslI CCNNNNNNNGG 3 cut(s) 27, 102, 157
BsmAI GTCTC 2 cut(s) 74, 629
BsnI GGCC 2 cut(s) 20, 149
BsoBI CYCGRG 1 cut(s) 401
Bsp143I GATC 2 cut(s) 315, 667
Bsp19I CCATGG 2 cut(s) 15, 436
BspACI CCGC 4 cut(s) 26, 35, 71, 181
BspANI GGCC 2 cut(s) 20, 149
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 13, 33, 425
BspMI ACCTGC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 31
BsrDI GCAATG 3 cut(s) 114, 375, 552
BsrI ACTGG 2 cut(s) 231, 600
BssECI CCNNGG 2 cut(s) 15, 436
BssMI GATC 2 cut(s) 315, 667
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 15, 436
Bst6I CTCTTC 1 cut(s) 370
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 2 cut(s) 15, 436
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 34, 165
BstKTI GATC 2 cut(s) 318, 670
BstMAI GTCTC 2 cut(s) 74, 629
BstMBI GATC 2 cut(s) 315, 667
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 631
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 652
BstUI CGCG 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 437
BsuRI GGCC 2 cut(s) 20, 149
BtgI CCRYGG 2 cut(s) 15, 436
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 2 cut(s) 249, 540
BtsIMutI CAGTG 5 cut(s) 224, 249, 325, 540, 607
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 2 cut(s) 34, 165
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 673
CviAII CATG 3 cut(s) 16, 437, 628
CviJI RGCY 7 cut(s) 14, 20, 89, 149, 415, 556, 622
CviKI_1 RGCY 7 cut(s) 14, 20, 89, 149, 415, 556, 622
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 1 cut(s) 567
DinI GGCGCC 1 cut(s) 33
DpnI GATC 2 cut(s) 317, 669
DpnII GATC 2 cut(s) 315, 667
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 370
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 15, 436
Eco57I CTGAAG 2 cut(s) 69, 153
Eco88I CYCGRG 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 15, 436
EgeI GGCGCC 1 cut(s) 33
EheI GGCGCC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 15, 436
FaeI CATG 3 cut(s) 19, 440, 631
FaiI YATR 6 cut(s) 17, 432, 438, 520, 530, 629
FatI CATG 3 cut(s) 15, 436, 627
FauI CCCGC 2 cut(s) 19, 64
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 2 cut(s) 33, 164
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 2 cut(s) 20, 149
HapII CCGG 3 cut(s) 38, 524, 614
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 34, 165
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 19, 440, 631
Hin6I GCGC 2 cut(s) 32, 163
HinP1I GCGC 2 cut(s) 32, 163
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 404, 606
HpaII CCGG 3 cut(s) 38, 524, 614
HphI GGTGA 3 cut(s) 259, 260, 452
Hpy166II GTNNAC 3 cut(s) 178, 358, 397
Hpy188I TCNGA 3 cut(s) 115, 634, 644
Hpy8I GTNNAC 3 cut(s) 178, 358, 397
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 139, 182
HpyCH4V TGCA 2 cut(s) 383, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 567
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 19, 440, 631
HspAI GCGC 2 cut(s) 32, 163
KasI GGCGCC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 315, 667
LmnI GCTCC 3 cut(s) 4, 11, 477
LweI GCATC 2 cut(s) 299, 370
MaeIII GTNAC 2 cut(s) 323, 646
MalI GATC 2 cut(s) 317, 669
MboI GATC 2 cut(s) 315, 667
MboII GAAGA 3 cut(s) 154, 218, 387
MfeI CAATTG 1 cut(s) 167
MluCI AATT 3 cut(s) 167, 201, 388
Mly113I GGCGCC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 3 cut(s) 93, 480, 612
MnlI CCTC 3 cut(s) 151, 414, 437
MseI TTAA 3 cut(s) 284, 339, 411
MslI CAYNNNNRTG 2 cut(s) 435, 545
MspI CCGG 3 cut(s) 38, 524, 614
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 1 cut(s) 167
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 43
NarI GGCGCC 1 cut(s) 32
NciI CCSGG 1 cut(s) 525
NcoI CCATGG 2 cut(s) 15, 436
NdeII GATC 2 cut(s) 315, 667
NlaIII CATG 3 cut(s) 19, 440, 631
NlaIV GGNNCC 3 cut(s) 13, 33, 425
NspI RCATGY 1 cut(s) 631
PciI ACATGT 1 cut(s) 627
PfeI GAWTC 1 cut(s) 606
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 412
PluTI GGCGCC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 412
PscI ACATGT 1 cut(s) 627
PspEI GGTNACC 1 cut(s) 323
PspN4I GGNNCC 3 cut(s) 13, 33, 425
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 435, 545
SaqAI TTAA 3 cut(s) 284, 339, 411
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 315, 667
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 525
SetI ASST 7 cut(s) 91, 162, 425, 511, 558, 624, 653
SfaNI GCATC 2 cut(s) 299, 370
SfcI CTRYAG 1 cut(s) 652
SfoI GGCGCC 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 435, 545
Sse9I AATT 3 cut(s) 167, 201, 388
SsiI CCGC 4 cut(s) 26, 35, 71, 181
SspDI GGCGCC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 2 cut(s) 15, 436
TaqI TCGA 1 cut(s) 465
TasI AATT 3 cut(s) 167, 201, 388
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 3 cut(s) 284, 339, 411
Tru9I TTAA 3 cut(s) 284, 339, 411
TscAI CASTG 5 cut(s) 231, 249, 325, 547, 607
TspDTI ATGAA 2 cut(s) 155, 481
TspRI CASTG 5 cut(s) 231, 249, 325, 547, 607
Van91I CCANNNNNTGG 1 cut(s) 102
XceI RCATGY 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.