Rroxscaffold_1G00026360

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000132
Physical Location & Seq
Reverse (-)
33192146 .. 33194351
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026360.1

Sequence Viewer

Length: 984 bp
ATGAAAACTCACGACGCCATCTTTGCGTTGAGACCCCAGACCCTTGCTACCAGGATCTTGAGTTACCGTGGAAGCTCTAAAAGTGGCAGGAGGCTTTGCACTTGCAGATGTTTTCCTTCTTTCAAGTTGCTGCATGTGATTAGTGGAATGAGAGCTAAACTCGAGAAGCTGCAGAAGGAAGCTGACATGATATTGGAAAATATCATCAAAGAACATAAAGAAGACAAGATAACAACAAAATCTCAGGGCGAGGGTGAAGTAGAGGAAGACTTGGTAGATGTACTCTTAAAGTATCACGATCATAGTTGCCTGAAGTTTTCCCTAACTGTTGAAAACATCAAAGCTGTAATTCAGGACATCTTTGGTGCTGGAAGTGAGACATCATCCACAACTGTGGATTGGTTAATGGCAGAGATGATAAAGAATCCAAGAATAATGAAAATGGCACAAGATGAGGTGAGAGAAGTTTTTAACAGAAAAGGGCATGTTGATGAAACTAGCATCCAGGATATGAAATATTTGAACTTAGTTATCAAAGAGACGATGAGATTACACCCTGCTGCTCCCTTCCTACTTCCAAGAGAATGCAGAGAGACTTGTGAGATAGCTGGATATAAAATACCCGTCAAAACAAGGGTAGTTATTAATGCATGGGCAATTGGTAGAGATGCAAAGTACTGGCCGGAGCCTGAAATCTTTTATCCTGAGCGGTTCCTTCATAGCTCTGTTGACTACAAAGGAACCAATTTTGAATATATCCCTTTTGGTGCTGGAAGGAGAATGTGTCCCGGCATAGCCTATGGTCTGGCGAATATGGAGCTCCAAGTTGCTTTGCTGTTGTACAATTTTGATTGGAAACTCCCCTATGAAATGAAGAATGAAGACCTGGACATGACTGAGGATTTTGGTATTACTGTTCGCAGAAAAGAAGATTTACACTTGGTTCCCACTCCCTATTATCCTGCACCAATTACAAGACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

327

Amino Acids

37.76

Weight (kDa)

7.11

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 42 - 310 1.5e-70 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 709
AciI CCGC 1 cut(s) 709
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 680
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 282, 677, 842
AgsI TTSAA 4 cut(s) 124, 332, 523, 752
AjnI CCWGG 3 cut(s) 50, 504, 885
AleI CACNNNNGTG 1 cut(s) 392
AluBI AGCT 8 cut(s) 75, 155, 169, 182, 344, 608, 723, 820
AluI AGCT 8 cut(s) 75, 155, 169, 182, 344, 608, 723, 820
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 4 cut(s) 25, 371, 533, 587
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 130, 169, 560
ArsI GACNNNNNNTTYG 1 cut(s) 37
AseI ATTAAT 1 cut(s) 645
AsuC2I CCSGG 1 cut(s) 789
AsuHPI GGTGA 2 cut(s) 266, 469
AvaI CYCGRG 1 cut(s) 161
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 3 cut(s) 228, 273, 888
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 3 cut(s) 117, 156, 547
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 3 cut(s) 52, 506, 887
BcnI CCSGG 1 cut(s) 789
BcoDI GTCTC 4 cut(s) 25, 371, 533, 587
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 3 cut(s) 131, 170, 561
BlsI GCNGC 3 cut(s) 132, 171, 562
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 4 cut(s) 52, 506, 789, 887
BmeT110I CYCGRG 1 cut(s) 161
BmiI GGNNCC 4 cut(s) 687, 713, 742, 945
BmrFI CCNGG 4 cut(s) 52, 506, 789, 887
BmsI GCATC 2 cut(s) 510, 658
BpiI GAAGAC 3 cut(s) 228, 273, 888
BplI GAGNNNNNCTC 2 cut(s) 144, 176
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 769, 799
Bse1I ACTGG 1 cut(s) 683
BseBI CCWGG 3 cut(s) 52, 506, 887
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 383, 501
BseMII CTCAG 3 cut(s) 257, 696, 888
BseNI ACTGG 1 cut(s) 683
BseXI GCAGC 3 cut(s) 117, 156, 547
BsgI GTGCAG 1 cut(s) 948
BshFI GGCC 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 2 cut(s) 683, 789
BslFI GGGAC 1 cut(s) 771
BsmAI GTCTC 4 cut(s) 25, 371, 533, 587
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 771
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 1 cut(s) 682
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 822
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 2 cut(s) 54, 298
BspACI CCGC 1 cut(s) 709
BspANI GGCC 1 cut(s) 682
BspCNI CTCAG 3 cut(s) 256, 697, 889
BspLI GGNNCC 4 cut(s) 687, 713, 742, 945
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 709
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 1 cut(s) 683
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 54, 298
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 3 cut(s) 52, 506, 887
Bst4CI ACNGT 4 cut(s) 68, 328, 394, 916
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 840
BstDEI CTNAG 4 cut(s) 243, 526, 705, 897
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 383, 501
BstKTI GATC 2 cut(s) 57, 301
BstMAI GTCTC 4 cut(s) 25, 371, 533, 587
BstMBI GATC 2 cut(s) 54, 298
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 3 cut(s) 52, 506, 887
BstNSI RCATGY 2 cut(s) 137, 488
BstSCI CCNGG 4 cut(s) 50, 504, 787, 885
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 3 cut(s) 117, 156, 547
BstV2I GAAGAC 3 cut(s) 228, 273, 888
BstX2I RGATCY 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 394
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 682
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 383, 501
CseI GACGC 1 cut(s) 23
Csp6I GTAC 3 cut(s) 281, 676, 841
CviAII CATG 5 cut(s) 134, 187, 485, 651, 892
CviQI GTAC 3 cut(s) 281, 676, 841
DdeI CTNAG 4 cut(s) 243, 526, 705, 897
DpnI GATC 2 cut(s) 56, 300
DpnII GATC 2 cut(s) 54, 298
EaeI YGGCCR 1 cut(s) 680
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 3 cut(s) 50, 504, 885
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 5 cut(s) 137, 190, 488, 654, 895
FaqI GGGAC 1 cut(s) 771
FatI CATG 5 cut(s) 133, 186, 484, 650, 891
Fnu4HI GCNGC 3 cut(s) 131, 170, 561
FokI GGATG 2 cut(s) 370, 488
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 3 cut(s) 131, 170, 561
FspBI CTAG 1 cut(s) 498
GluI GCNGC 3 cut(s) 131, 170, 561
HaeIII GGCC 1 cut(s) 682
HapII CCGG 2 cut(s) 683, 789
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 5 cut(s) 137, 190, 488, 654, 895
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 1 cut(s) 424
HpaII CCGG 2 cut(s) 683, 789
HphI GGTGA 2 cut(s) 266, 469
Hpy166II GTNNAC 1 cut(s) 730
Hpy188III TCNNGA 6 cut(s) 11, 58, 163, 296, 353, 704
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 5 cut(s) 126, 169, 577, 725, 768
HpyCH4III ACNGT 4 cut(s) 68, 328, 394, 916
HpyCH4V TGCA 8 cut(s) 99, 105, 133, 172, 588, 650, 671, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 4 cut(s) 243, 526, 705, 897
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 5 cut(s) 137, 190, 488, 654, 895
Kzo9I GATC 2 cut(s) 54, 298
LmnI GCTCC 4 cut(s) 568, 685, 817, 825
Lsp1109I GCAGC 3 cut(s) 117, 156, 547
LweI GCATC 2 cut(s) 510, 658
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 56, 300
MbiI CCGCTC 1 cut(s) 709
MboI GATC 2 cut(s) 54, 298
MboII GAAGA 5 cut(s) 233, 278, 886, 893, 941
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 822
MluCI AATT 5 cut(s) 348, 657, 745, 844, 969
MnlI CCTC 5 cut(s) 84, 244, 256, 448, 892
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 4 cut(s) 287, 404, 471, 645
MslI CAYNNNNRTG 2 cut(s) 392, 489
MspI CCGG 2 cut(s) 683, 789
MspR9I CCNGG 4 cut(s) 52, 506, 789, 887
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 3 cut(s) 52, 506, 887
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 789
NdeII GATC 2 cut(s) 54, 298
NlaIII CATG 5 cut(s) 137, 190, 488, 654, 895
NlaIV GGNNCC 4 cut(s) 687, 713, 742, 945
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 2 cut(s) 137, 488
OliI CACNNNNGTG 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 161
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 3 cut(s) 132, 171, 562
PshBI ATTAAT 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 3 cut(s) 50, 504, 885
PspGI CCWGG 3 cut(s) 50, 504, 885
PspN4I GGNNCC 4 cut(s) 687, 713, 742, 945
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 54
RsaI GTAC 3 cut(s) 282, 677, 842
RsaNI GTAC 3 cut(s) 281, 676, 841
RseI CAYNNNNRTG 2 cut(s) 392, 489
SacI GAGCTC 1 cut(s) 822
SaqAI TTAA 4 cut(s) 287, 404, 471, 645
SatI GCNGC 3 cut(s) 131, 170, 561
Sau3AI GATC 2 cut(s) 54, 298
ScaI AGTACT 1 cut(s) 677
ScrFI CCNGG 4 cut(s) 52, 506, 789, 887
SduI GDGCHC 1 cut(s) 822
SfaNI GCATC 2 cut(s) 510, 658
SfcI CTRYAG 1 cut(s) 170
Sfr274I CTCGAG 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 392, 489
SmlI CTYRAG 2 cut(s) 58, 161
SmoI CTYRAG 2 cut(s) 58, 161
Sse9I AATT 5 cut(s) 348, 657, 745, 844, 969
SsiI CCGC 1 cut(s) 709
SspI AATATT 1 cut(s) 518
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 4 cut(s) 50, 504, 787, 885
TaaI ACNGT 4 cut(s) 68, 328, 394, 916
TaqI TCGA 1 cut(s) 162
TasI AATT 5 cut(s) 348, 657, 745, 844, 969
TatI WGTACW 3 cut(s) 280, 675, 840
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 4 cut(s) 287, 404, 471, 645
Tru9I TTAA 4 cut(s) 287, 404, 471, 645
TseI GCWGC 3 cut(s) 130, 169, 560
TspDTI ATGAA 8 cut(s) 17, 452, 507, 527, 707, 882, 887, 894
VspI ATTAAT 1 cut(s) 645
XceI RCATGY 2 cut(s) 137, 488
XhoI CTCGAG 1 cut(s) 161
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 677
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.