MD00G1153800.v1.1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000132
Physical Location & Seq
Reverse (-)
33647125 .. 33648119
995 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1153800.v1.1.491

Sequence Viewer

Length: 795 bp
ATGATCAGTAGTACTAGTACTACTACAGCAGGCAATGACAAAGTGGAGGAGGGGGAGGAGGAAAATTTTGTTGACGTACTTCTAAAACTTAAAGAGTCCAGTAAGGCAGAGTTCAACTTCACTACCAATCAGATCAAAGATATCATTCTGGACATCTTCGCTGCAGCAAGCGAGACTTCAGCTACTACCATAGAATGGGCAATGTCAGAGTTGATGAAAAACCCAAGAATCATGAAGAGGGCTCAAGCTGAAGTGAGACAGTCAGTTGTCCAATTTGAAGGAAAGAAAGGCAAAGTTATTGAAGAAAGAGATGTTAAAAAGTTGGACTACTTGAAATTGGTGGTGAAAGAAACTCTGAGGTTACACTCTCCACTCGCTTTGCTCCCAAGAGAAGCAAGGGACACGGTTCAAGTTGGCGGATTCAAATTACCAGTTAAATCAAAAGTAATTATTAATTTATGGGCAATGGGAAGAGACCTAGATATATGGGGGGCAGATGCTGAGTGTTTTAAGCCAGAGAGGTTTCATGGCTCTTCTGTTGACTTTAAGGGTTTTGACTTTGAGTTCATTCCATTTGGTGCTGGCAGAAGAATATGTCCAGGCATGTCATTTGGTGTTACCGTGATTGAACTTGCTCTCGCTGAATTGCTTTACCACTTCGATTGGAAACTGGCGAATGGGATGAATCCAGATGAACTTGACATGACAGAGAGTTTAGGACTGACCTGCAAGAGAAAGAATGCTTTGTACCTAACTGCCACCCCACATTTTACTTCACTCGGTGAGTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

265

Amino Acids

29.62

Weight (kDa)

5.57

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 247 4.7e-59 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 734
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 1 cut(s) 417
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 2 cut(s) 162, 270
AdeI CACNNNGTG 1 cut(s) 782
AfaI GTAC 4 cut(s) 13, 19, 78, 749
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 7 cut(s) 115, 278, 302, 334, 410, 424, 629
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 2 cut(s) 182, 248
AluI AGCT 2 cut(s) 182, 248
Alw26I GTCTC 3 cut(s) 167, 250, 468
AlwNI CAGNNNCTG 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 161, 164
ApoI RAATTY 1 cut(s) 64
AseI ATTAAT 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 355, 794
BanII GRGCYC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 148, 176
BciT130I CCWGG 1 cut(s) 600
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 167, 250, 468
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 15, 479
BfmI CTRYAG 2 cut(s) 24, 162
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 2 cut(s) 162, 165
BlsI GCNGC 2 cut(s) 163, 166
BmcAI AGTACT 2 cut(s) 13, 19
Bme1390I CCNGG 1 cut(s) 600
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 3 cut(s) 99, 431, 675
Bse3DI GCAATG 3 cut(s) 40, 207, 471
BseBI CCWGG 1 cut(s) 600
BseGI GGATG 1 cut(s) 687
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 3 cut(s) 40, 207, 471
BseMII CTCAG 2 cut(s) 347, 492
BseNI ACTGG 3 cut(s) 99, 431, 675
BseRI GAGGAG 2 cut(s) 62, 71
BseXI GCAGC 2 cut(s) 148, 176
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 3 cut(s) 167, 250, 468
BsmFI GGGAC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 745
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 3, 132
BspACI CCGC 1 cut(s) 417
BspCNI CTCAG 2 cut(s) 348, 493
BspHI TCATGA 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 734
BspQI GCTCTTC 1 cut(s) 538
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 3 cut(s) 40, 207, 471
BsrI ACTGG 3 cut(s) 99, 431, 675
BssMI GATC 2 cut(s) 3, 132
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 261, 406, 622
Bst6I CTCTTC 3 cut(s) 230, 466, 538
BstC8I GCNNGC 3 cut(s) 31, 169, 583
BstDEI CTNAG 2 cut(s) 356, 501
BstF5I GGATG 1 cut(s) 687
BstKTI GATC 2 cut(s) 6, 135
BstMAI GTCTC 3 cut(s) 167, 250, 468
BstMBI GATC 2 cut(s) 3, 132
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 598
BstSFI CTRYAG 2 cut(s) 24, 162
BstV1I GCAGC 2 cut(s) 148, 176
BtsCI GGATG 1 cut(s) 687
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 31, 169, 583
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 231
Csp6I GTAC 4 cut(s) 12, 18, 77, 748
CspCI CAANNNNNGTGG 4 cut(s) 360, 395, 644, 679
CviAII CATG 4 cut(s) 232, 527, 604, 703
CviJI RGCY 5 cut(s) 182, 242, 248, 514, 531
CviKI_1 RGCY 5 cut(s) 182, 242, 248, 514, 531
CviQI GTAC 4 cut(s) 12, 18, 77, 748
DdeI CTNAG 2 cut(s) 356, 501
DpnI GATC 2 cut(s) 5, 134
DpnII GATC 2 cut(s) 3, 132
DraIII CACNNNGTG 1 cut(s) 782
Eam1104I CTCTTC 3 cut(s) 230, 466, 538
EarI CTCTTC 3 cut(s) 230, 466, 538
EciI GGCGGA 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 162, 270
EcoRII CCWGG 1 cut(s) 598
EcoRV GATATC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 4 cut(s) 235, 530, 607, 706
FaiI YATR 9 cut(s) 191, 233, 460, 485, 487, 528, 595, 605, 704
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FaqI GGGAC 1 cut(s) 413
FatI CATG 4 cut(s) 231, 526, 603, 702
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 162, 165
FokI GGATG 1 cut(s) 694
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 162, 165
FspBI CTAG 2 cut(s) 15, 479
GluI GCNGC 2 cut(s) 162, 165
Hin1II CATG 4 cut(s) 235, 530, 607, 706
HincII GTYRAC 2 cut(s) 73, 541
HindII GTYRAC 2 cut(s) 73, 541
HinfI GANTC 5 cut(s) 95, 228, 420, 685, 785
HphI GGTGA 2 cut(s) 355, 794
Hpy166II GTNNAC 2 cut(s) 73, 541
Hpy188I TCNGA 3 cut(s) 132, 208, 357
Hpy188III TCNNGA 3 cut(s) 149, 232, 689
Hpy8I GTNNAC 2 cut(s) 73, 541
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 261, 406, 622
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 164, 729
HpyF3I CTNAG 2 cut(s) 356, 501
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 235, 530, 607, 706
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 132
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 387
Lsp1109I GCAGC 2 cut(s) 148, 176
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 15, 479
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 360, 616, 786
MalI GATC 2 cut(s) 5, 134
MboI GATC 2 cut(s) 3, 132
MboII GAAGA 6 cut(s) 148, 247, 314, 483, 525, 600
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 7 cut(s) 64, 272, 335, 425, 447, 454, 644
MlyI GAGTC 2 cut(s) 104, 794
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 7 cut(s) 40, 43, 49, 52, 231, 351, 513
MseI TTAA 6 cut(s) 90, 315, 435, 453, 510, 546
MspR9I CCNGG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 600
NdeII GATC 2 cut(s) 3, 132
NlaIII CATG 4 cut(s) 235, 530, 607, 706
NmuCI GTSAC 1 cut(s) 786
NspI RCATGY 1 cut(s) 607
PagI TCATGA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 538
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 3 cut(s) 228, 420, 685
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 2 cut(s) 163, 166
PleI GAGTC 2 cut(s) 103, 793
PpsI GAGTC 2 cut(s) 103, 793
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 500
RsaI GTAC 4 cut(s) 13, 19, 78, 749
RsaNI GTAC 4 cut(s) 12, 18, 77, 748
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 6 cut(s) 90, 315, 435, 453, 510, 546
SatI GCNGC 2 cut(s) 162, 165
Sau3AI GATC 2 cut(s) 3, 132
ScaI AGTACT 2 cut(s) 13, 19
SchI GAGTC 2 cut(s) 104, 794
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 1 cut(s) 244
SetI ASST 8 cut(s) 78, 184, 250, 362, 480, 524, 728, 753
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 2 cut(s) 24, 162
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 7 cut(s) 64, 272, 335, 425, 447, 454, 644
SsiI CCGC 1 cut(s) 417
SspMI CTAG 2 cut(s) 15, 479
StyD4I CCNGG 1 cut(s) 598
TaaI ACNGT 3 cut(s) 261, 406, 622
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 660
TasI AATT 7 cut(s) 64, 272, 335, 425, 447, 454, 644
TatI WGTACW 2 cut(s) 11, 17
TfiI GAWTC 3 cut(s) 228, 420, 685
Tru1I TTAA 6 cut(s) 90, 315, 435, 453, 510, 546
Tru9I TTAA 6 cut(s) 90, 315, 435, 453, 510, 546
TseFI GTSAC 1 cut(s) 786
TseI GCWGC 2 cut(s) 161, 164
Tsp45I GTSAC 1 cut(s) 786
TspDTI ATGAA 6 cut(s) 230, 248, 515, 556, 698, 708
Van91I CCANNNNNTGG 1 cut(s) 195
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 607
XspI CTAG 2 cut(s) 15, 479
ZrmI AGTACT 2 cut(s) 13, 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.