FvH4_6g21500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
15089224 .. 15090018
795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21500.t1

Sequence Viewer

Length: 579 bp
ATGGTGACTGGTGTTTTTATTTCTGGGAGTGAGAAATCAGCTGTCATTGTAGATTGGACAATGTCAGAAATGATAAAACAACCGAGAATTTTGAAAAGGGCACAGGATGAGGTACTGAGGTTACATACTCCTGGTCCCCTGTTACTTCCAAGAGAATGTGGAGAGAGGTGTGAGATTGATGGATATGAAATACCCGTCAAAACAAAGGTAATCGTGAATGCTTGGGCAATCGGAAGGGATCCCAATTATTGGAGTGAGCCGGAGACCTTTAATCCAGAGAGATTCCTTGATACTTCTATTGACTACCAAGGAACATACTTTGAATATATCCCATTTGGTGCTGGAAGGAGAATGTGCCCTGGCATATTGTATGGTCTGGCTAGTGTTGAGCTCCCACTAGCAATGTTGTTATATCATTTTGATTGGAAGCTACCTAATGGAATGAAGAATGAAGACTTAGACATGACTGAGGAGTTCGCCGCTGTAGTCCAAAGAAAACAAGATCTGCATTTGATTCCCACTCCATATCATCGTCCTCCGACTGATGCAAAGCAAGTTCAAAAAACAGAAATAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

193

Amino Acids

22.02

Weight (kDa)

5.28

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 24 - 164 6.1e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AciI CCGC 1 cut(s) 480
AclWI GGATC 2 cut(s) 233, 246
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 3 cut(s) 94, 323, 560
AjnI CCWGG 2 cut(s) 130, 358
AluBI AGCT 3 cut(s) 41, 391, 430
AluI AGCT 3 cut(s) 41, 391, 430
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 2 cut(s) 233, 246
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 103, 359
BaeI ACNNNNGTAYC 2 cut(s) 104, 137
BamHI GGATCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 393
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 132, 360
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 381, 398
BfmI CTRYAG 1 cut(s) 483
BglII AGATCT 1 cut(s) 502
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 132, 360
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 136, 240
BmrFI CCNGG 2 cut(s) 132, 360
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 307, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 2 cut(s) 132, 360
BseDI CCNNGG 2 cut(s) 307, 358
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 107, 459
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 2 cut(s) 103, 359
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 3 cut(s) 103, 359, 393
Bsp143I GATC 2 cut(s) 238, 502
BspACI CCGC 1 cut(s) 480
BspCNI CTCAG 2 cut(s) 108, 460
BspLI GGNNCC 2 cut(s) 136, 240
BspPI GGATC 2 cut(s) 233, 246
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 307, 358
BssMI GATC 2 cut(s) 238, 502
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 132, 360
BstDEI CTNAG 3 cut(s) 116, 457, 468
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 241, 505
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 238, 502
BstNI CCWGG 2 cut(s) 132, 360
BstSCI CCNGG 2 cut(s) 130, 358
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 2 cut(s) 103, 359
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 2 cut(s) 238, 502
BstYI RGATCY 2 cut(s) 238, 502
BtsCI GGATG 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 463
CviJI RGCY 5 cut(s) 41, 259, 380, 391, 430
CviKI_1 RGCY 5 cut(s) 41, 259, 380, 391, 430
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 3 cut(s) 116, 457, 468
DpnI GATC 2 cut(s) 240, 504
DpnII GATC 2 cut(s) 238, 502
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 130, 358
EcoT14I CCWWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 466
FaiI YATR 9 cut(s) 126, 186, 316, 327, 365, 372, 412, 464, 526
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 2 cut(s) 381, 398
GluI GCNGC 1 cut(s) 480
HapII CCGG 1 cut(s) 260
Hin1II CATG 1 cut(s) 466
HinfI GANTC 2 cut(s) 282, 514
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 67, 233, 540
Hpy188III TCNNGA 2 cut(s) 214, 275
HpyAV CCTTC 2 cut(s) 228, 339
HpyCH4V TGCA 2 cut(s) 508, 548
HpyF3I CTNAG 3 cut(s) 116, 457, 468
Hsp92II CATG 1 cut(s) 466
Kzo9I GATC 2 cut(s) 238, 502
LmnI GCTCC 1 cut(s) 396
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 381, 398
MaeIII GTNAC 3 cut(s) 4, 120, 141
MalI GATC 2 cut(s) 240, 504
MboI GATC 2 cut(s) 238, 502
MboII GAAGA 2 cut(s) 457, 464
MflI RGATCY 2 cut(s) 238, 502
MhlI GDGCHC 3 cut(s) 103, 359, 393
MluCI AATT 2 cut(s) 87, 244
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 5 cut(s) 103, 111, 159, 463, 546
MseI TTAA 2 cut(s) 270, 577
MspA1I CMGCKG 2 cut(s) 41, 482
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 132, 360
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 2 cut(s) 132, 360
NdeII GATC 2 cut(s) 238, 502
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 2 cut(s) 136, 240
NmuCI GTSAC 1 cut(s) 4
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 282, 514
PflFI GACNNNGTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 1 cut(s) 481
Psp124BI GAGCTC 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 130, 358
PspGI CCWGG 2 cut(s) 130, 358
PspN4I GGNNCC 2 cut(s) 136, 240
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 238, 502
PsyI GACNNNGTC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SacI GAGCTC 1 cut(s) 393
SaqAI TTAA 2 cut(s) 270, 577
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 2 cut(s) 238, 502
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 132, 360
SduI GDGCHC 3 cut(s) 103, 359, 393
SetI ASST 9 cut(s) 43, 114, 122, 170, 210, 269, 393, 432, 436
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 134
Sse9I AATT 2 cut(s) 87, 244
SsiI CCGC 1 cut(s) 480
SspMI CTAG 2 cut(s) 381, 398
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 130, 358
StyI CCWWGG 1 cut(s) 307
TasI AATT 2 cut(s) 87, 244
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 2 cut(s) 282, 514
Tru1I TTAA 2 cut(s) 270, 577
Tru9I TTAA 2 cut(s) 270, 577
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 201, 458, 465
Tth111I GACNNNGTC 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 87
XspI CTAG 2 cut(s) 381, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.