Rmu_sc0002655.1_g000011

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002655.1
OG0000132
Physical Location & Seq
Reverse (-)
51299 .. 51762
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002655.1_g000011.1.cds

Sequence Viewer

Length: 384 bp
atgaatggagcaaatgatctactaagcgttcttcaaaatctgcagcagcttggtgagcttgtagttccgttaacaactgaccatatcaaagcggttatgctggacattttcacaactgggagtgacacatcatcttcaacaatggagtgggcaatgtcggaaatggtaaaaacgccacgagtgatggaaaaggcacaaacagagatgaggcaattctttggtgctaaaggaaatgtcgatgaaacaggtcttcagcaactgaaattcctgaaggcgatgatcaaagtgattttgagattacacccaccgattcctctcctacttccaaaagaatgtagtgaaagttgtgagattaatggatatgggatacctgtgaaaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

127

Amino Acids

14.08

Weight (kDa)

5.64

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 236, 290
AgsI TTSAA 2 cut(s) 35, 138
AluBI AGCT 2 cut(s) 49, 58
AluI AGCT 2 cut(s) 49, 58
AlwNI CAGNNNCTG 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 43, 46
ApoI RAATTY 1 cut(s) 263
AseI ATTAAT 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 65
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 55, 58
BccI CCATC 1 cut(s) 178
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 2 cut(s) 44, 47
BlsI GCNGC 2 cut(s) 45, 48
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 55, 58
Bsp143I GATC 2 cut(s) 16, 279
BspACI CCGC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 121
BssMI GATC 2 cut(s) 16, 279
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 2 cut(s) 19, 282
BstMBI GATC 2 cut(s) 16, 279
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 55, 58
BstV2I GAAGAC 1 cut(s) 242
BsuI GTATCC 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 259
CviJI RGCY 2 cut(s) 49, 58
CviKI_1 RGCY 2 cut(s) 49, 58
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 18, 281
DpnII GATC 2 cut(s) 16, 279
Eco57I CTGAAG 2 cut(s) 236, 290
FaiI YATR 3 cut(s) 84, 98, 363
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 44, 47
Fsp4HI GCNGC 2 cut(s) 44, 47
GluI GCNGC 2 cut(s) 44, 47
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 1 cut(s) 310
HpaI GTTAAC 1 cut(s) 72
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 279
KspAI GTTAAC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 16, 279
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 86, 102, 231, 281
Lsp1109I GCAGC 2 cut(s) 55, 58
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 18, 281
MboI GATC 2 cut(s) 16, 279
MboII GAAGA 3 cut(s) 23, 126, 242
MluCI AATT 2 cut(s) 212, 263
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 2 cut(s) 201, 324
MseI TTAA 2 cut(s) 71, 354
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 2 cut(s) 16, 279
NmuCI GTSAC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 2 cut(s) 45, 48
PshBI ATTAAT 1 cut(s) 354
PstI CTGCAG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 259
SaqAI TTAA 2 cut(s) 71, 354
SatI GCNGC 2 cut(s) 44, 47
Sau3AI GATC 2 cut(s) 16, 279
SetI ASST 5 cut(s) 51, 60, 250, 373, 383
SfcI CTRYAG 1 cut(s) 41
SgeI CNNG 8 cut(s) 62, 71, 113, 129, 189, 191, 258, 280
Sse9I AATT 2 cut(s) 212, 263
SsiI CCGC 1 cut(s) 92
TaqI TCGA 1 cut(s) 237
TasI AATT 2 cut(s) 212, 263
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 71, 354
Tru9I TTAA 2 cut(s) 71, 354
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 2 cut(s) 43, 46
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 17, 255
TspGWI ACGGA 1 cut(s) 57
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.