Rh5DG310400

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
39649568 .. 39649894
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG310400.1

Sequence Viewer

Length: 327 bp
ATGCTTGGGCAATCGGAAGAGATCCCAATTACTGGACTGAGCCCGAGACCTTTTATCCAGAGAGATTCCTTGATAGCTCTTTTGACTACCAAGGAACGAACTTTTGAGTATATCCCATTTGGTGCTGGAAGGAGAATTTTCCCTGGCATATTATACGGTCTGGCAAATGTTGAGCTCCCACTAGCATTGTTGTTATATCATTTTGATTGGAAACTCCCTAATGGAATGAAGAATGAGGACTTGGACATGACTGAGGACTTTGGCATTGCAGTCCGCAGAAAGGAAGATCTTCATTTGATTGCCACTCCATATCATTCCTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.27

Weight (kDa)

5.53

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 95 3.8e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 32
AciI CCGC 1 cut(s) 274
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 32, 280
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 77, 175
AluI AGCT 2 cut(s) 77, 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 43
ApoI RAATTY 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 43
BanII GRGCYC 2 cut(s) 44, 177
Bbv12I GWGCWC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 182
BglII AGATCT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 90, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 280
Bse1I ACTGG 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 90, 142
BseLI CCNNNNNNNGG 2 cut(s) 32, 280
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 29, 243
BseNI ACTGG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 32, 280
BsmAI GTCTC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 44, 177
Bsp143I GATC 2 cut(s) 21, 286
BspACI CCGC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 30, 244
BspPI GGATC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 90, 142
BssMI GATC 2 cut(s) 21, 286
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 38, 252
BstKTI GATC 2 cut(s) 24, 289
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 21, 286
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstX2I RGATCY 2 cut(s) 21, 286
BstYI RGATCY 2 cut(s) 21, 286
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 1 cut(s) 247
CviJI RGCY 3 cut(s) 42, 77, 175
CviKI_1 RGCY 3 cut(s) 42, 77, 175
DdeI CTNAG 2 cut(s) 38, 252
DpnI GATC 2 cut(s) 23, 288
DpnII GATC 2 cut(s) 21, 286
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 44, 177
Eco31I GGTCTC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 44, 177
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 250
FaiI YATR 6 cut(s) 111, 149, 154, 196, 248, 310
FatI CATG 1 cut(s) 246
FriOI GRGCYC 2 cut(s) 44, 177
FspBI CTAG 1 cut(s) 182
Hin1II CATG 1 cut(s) 250
HinfI GANTC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 38, 252
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 2 cut(s) 21, 286
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 18, 71, 111, 129, 146, 156
MaeI CTAG 1 cut(s) 182
MalI GATC 2 cut(s) 23, 288
MboI GATC 2 cut(s) 21, 286
MboII GAAGA 4 cut(s) 29, 241, 281, 296
MflI RGATCY 2 cut(s) 21, 286
MhlI GDGCHC 2 cut(s) 44, 177
MluCI AATT 2 cut(s) 27, 135
MnlI CCTC 2 cut(s) 229, 247
MroXI GAANNNNTTC 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
NdeII GATC 2 cut(s) 21, 286
NlaIII CATG 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PsuI RGATCY 2 cut(s) 21, 286
SacI GAGCTC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 21, 286
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 44, 177
SetI ASST 3 cut(s) 52, 79, 177
Sse9I AATT 2 cut(s) 27, 135
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 158
TasI AATT 2 cut(s) 27, 135
TfiI GAWTC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 242, 281
Van91I CCANNNNNTGG 1 cut(s) 32
XapI RAATTY 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.