Rh2DG691100

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000132
Physical Location & Seq
Forward (+)
90783578 .. 90795336
11759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG691100.1

Sequence Viewer

Length: 702 bp
ATGCACCTAAAACTGGGTCAGTTGGAGCTTATAATAATATCTTCCTCCAAAGCGGCACAAGAGGTTTTGAAGACACATGAGCTCACTTTTGCTCAGAGGCCTCTGGTTTTGGCAGTAGAAGTCATGTCCTTTGGTCAAGCAAGCATTGTCTTTGCTCCTTATGGTGATTTCTGGAGAGAGCTGCGCAAACTTTGTGTTCTCGAACTCTTCAGCGCTAAGCGTGTGCAATCTTTTAGATCGATAAGAGAAGAAGAGGTATCAAATCTCATCGAATCCATTTCTACATCATCAAACGGACCTACTCTGATAAACTTAAGTGAGAAGATCTCCAGCTTGACAAATGGAATAGTATCGAGGGCAGCGTTTGGAAAAAAGTGCAAAGATGAGAAAGAGTTTACTTCATTGCTTGAGGCAGCAATAAAACTGGCTGCAGGCTTTGACATACCTGACTTGTTTCCTTCACTAAAATTTCTTGGTTTCGTCACCGGGACGATACCTGCGATGAAGAAGATGAGGAACAAGCTTGGAAAGATCCTTGAGAGCATCATCAACGATCATAAGATCAAAATTCAAGGCAATGAGATTAACAACCCGGAAGAAGATATTGTTGACGTACTTCTAAAACTTCAAGAATCCAAGGAGCTTGAATTCACAACCGATCAGATCAAAGATGTAATTATGAGCGATCAAACTAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

233

Amino Acids

26.04

Weight (kDa)

5.77

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 226 1.5e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
Acc16I TGCGCA 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 505
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 3 cut(s) 467, 567, 647
AcuI CTGAAG 1 cut(s) 193
AfaI GTAC 1 cut(s) 615
AfeI AGCGCT 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 13
AflII CTTAAG 1 cut(s) 313
AgsI TTSAA 4 cut(s) 70, 572, 629, 647
AluBI AGCT 6 cut(s) 28, 82, 181, 333, 523, 643
AluI AGCT 6 cut(s) 28, 82, 181, 333, 523, 643
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 214
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 4 cut(s) 181, 359, 413, 428
ApoI RAATTY 3 cut(s) 467, 567, 647
AspLEI GCGC 2 cut(s) 186, 215
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 2 cut(s) 487, 593
AsuHPI GGTGA 2 cut(s) 176, 475
AvaII GGWCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 4 cut(s) 168, 371, 415, 425
BcnI CCSGG 2 cut(s) 487, 593
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 216
BfrI CTTAAG 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 505
BglII AGATCT 1 cut(s) 324
BisI GCNGC 5 cut(s) 54, 182, 360, 414, 429
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 5 cut(s) 55, 183, 361, 415, 430
Bme1390I CCNGG 2 cut(s) 487, 593
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 487, 593
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 2 cut(s) 193, 313
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 428, 557
BpuMI CCSGG 2 cut(s) 487, 593
Bsa29I ATCGAT 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 636
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 18, 429
Bse3DI GCAATG 2 cut(s) 401, 583
BseCI ATCGAT 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 2 cut(s) 401, 583
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 18, 429
BseXI GCAGC 4 cut(s) 168, 371, 415, 425
BshFI GGCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 486, 593
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 239
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 1 cut(s) 526
BspTI CTTAAG 1 cut(s) 313
BsrDI GCAATG 2 cut(s) 401, 583
BsrI ACTGG 2 cut(s) 18, 429
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
BssT1I CCWWGG 1 cut(s) 636
Bst6I CTCTTC 2 cut(s) 212, 246
BstAFI CTTAAG 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 142, 433
BstDEI CTNAG 2 cut(s) 93, 216
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 186, 215
BstKTI GATC 8 cut(s) 239, 327, 534, 556, 564, 661, 666, 688
BstMBI GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
BstSCI CCNGG 2 cut(s) 485, 591
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 4 cut(s) 168, 371, 415, 425
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 324, 531
BstYI RGATCY 2 cut(s) 324, 531
Bsu15I ATCGAT 1 cut(s) 239
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 515
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 142, 433
CfoI GCGC 2 cut(s) 186, 215
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 239
Csp6I GTAC 1 cut(s) 614
CviAII CATG 2 cut(s) 77, 124
CviJI RGCY 9 cut(s) 28, 82, 100, 181, 333, 428, 435, 523, 643
CviKI_1 RGCY 9 cut(s) 28, 82, 100, 181, 333, 428, 435, 523, 643
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 2 cut(s) 93, 216
DpnI GATC 8 cut(s) 238, 326, 533, 555, 563, 660, 665, 687
DpnII GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
Eam1104I CTCTTC 2 cut(s) 212, 246
EarI CTCTTC 2 cut(s) 212, 246
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 296
Eco47III AGCGCT 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 647
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 2 cut(s) 80, 127
FaiI YATR 7 cut(s) 32, 78, 125, 162, 443, 558, 680
FaqI GGGAC 1 cut(s) 502
FatI CATG 2 cut(s) 76, 123
Fnu4HI GCNGC 5 cut(s) 54, 182, 360, 414, 429
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 5 cut(s) 54, 182, 360, 414, 429
FspI TGCGCA 1 cut(s) 185
GlaI GCGC 2 cut(s) 185, 214
GluI GCNGC 5 cut(s) 54, 182, 360, 414, 429
GsuI CTGGAG 2 cut(s) 193, 313
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 486, 593
HhaI GCGC 2 cut(s) 186, 215
Hin1II CATG 2 cut(s) 80, 127
Hin6I GCGC 2 cut(s) 184, 213
HinP1I GCGC 2 cut(s) 184, 213
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 272, 632
HpaII CCGG 2 cut(s) 486, 593
HphI GGTGA 2 cut(s) 176, 475
Hpy166II GTNNAC 2 cut(s) 396, 610
Hpy188I TCNGA 3 cut(s) 96, 306, 663
Hpy188III TCNNGA 3 cut(s) 172, 200, 629
Hpy8I GTNNAC 2 cut(s) 396, 610
HpyAV CCTTC 1 cut(s) 468
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 4 cut(s) 4, 226, 378, 431
HpyF3I CTNAG 2 cut(s) 93, 216
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 2 cut(s) 80, 127
HspAI GCGC 2 cut(s) 184, 213
Kzo9I GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
LmnI GCTCC 3 cut(s) 25, 160, 640
LpnPI CCDG 9 cut(s) 89, 157, 343, 410, 417, 459, 499, 510, 606
Lsp1109I GCAGC 4 cut(s) 168, 371, 415, 425
LweI GCATC 1 cut(s) 552
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 481
MalI GATC 8 cut(s) 238, 326, 533, 555, 563, 660, 665, 687
MboI GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
MflI RGATCY 2 cut(s) 324, 531
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 4 cut(s) 467, 567, 647, 675
MnlI CCTC 8 cut(s) 55, 55, 90, 111, 247, 348, 403, 507
MseI TTAA 2 cut(s) 314, 585
MspCI CTTAAG 1 cut(s) 313
MspI CCGG 2 cut(s) 486, 593
MspR9I CCNGG 2 cut(s) 487, 593
NciI CCSGG 2 cut(s) 487, 593
NdeII GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
NlaIII CATG 2 cut(s) 80, 127
NmuCI GTSAC 1 cut(s) 481
NsbI TGCGCA 1 cut(s) 185
PceI AGGCCT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 2 cut(s) 359, 497
PfeI GAWTC 2 cut(s) 272, 632
PkrI GCNGC 5 cut(s) 55, 183, 361, 415, 430
PsiI TTATAA 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 2 cut(s) 324, 531
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 314, 585
SatI GCNGC 5 cut(s) 54, 182, 360, 414, 429
Sau3AI GATC 8 cut(s) 236, 324, 531, 553, 561, 658, 663, 685
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 487, 593
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 313, 407, 536
SmoI CTYRAG 3 cut(s) 313, 407, 536
Sse9I AATT 4 cut(s) 467, 567, 647, 675
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 1 cut(s) 53
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 485, 591
StyI CCWWGG 1 cut(s) 636
TaiI ACGT 1 cut(s) 615
TaqI TCGA 4 cut(s) 201, 239, 270, 353
TasI AATT 4 cut(s) 467, 567, 647, 675
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 272, 632
Tru1I TTAA 2 cut(s) 314, 585
Tru9I TTAA 2 cut(s) 314, 585
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 4 cut(s) 181, 359, 413, 428
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 390, 518
TspGWI ACGGA 1 cut(s) 309
Vha464I CTTAAG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 3 cut(s) 467, 567, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.