Rh5BG296700

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
37961714 .. 37962825
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG296700.1

Sequence Viewer

Length: 552 bp
ATGCTGAATCTCATCAAATGGATTGCTTCAAAAGCCAGGTCACCTATCAATCTTACAGAGAAAATTTACTCATCTACATATATGATCACTTCACGAGCAGCCTTTGGTAAAAAGAGCAAATATCATGAAGATTTTATAGATGTTGTGAAGGAAGGTACACAATTGGCAGGAGGCTTTGATCTTGCAGATGTCTTTCCTTCTTTCAGTTTGCTTCATATGATAACTGGGATGAGGCCTAAACTTGAAAGGTTGCACAAAAAATCTGACAGGATACTGGAAAACATCATCAAAGAACACAAAGATAAGGCAACATCAAAAGGTTCTGAGAGGGAAGCACAGGAAGACCTGGTAGATGTACTCTTAAAATTTCACGAGGATAATGATGGCCCTGAATTTAACCTAACTACTGACAACATCAAAGCAGTAATCTTGAATTTGACTTCAGTAATTCGTCTTGACAAGAACTGCTCAACTTCTCAAGTTGTTCAATTCCAAGAGACCCACAGATCAAGTCCACTTGATCTACAGGTCTCTTGGAGAAGAACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.92

Weight (kDa)

8.59

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 146 1.1e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 63, 365, 392, 433
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 157, 357
AgsI TTSAA 4 cut(s) 30, 245, 433, 488
AjnI CCWGG 2 cut(s) 35, 345
Alw26I GTCTC 2 cut(s) 491, 535
AoxI GGCC 2 cut(s) 233, 385
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 4 cut(s) 63, 365, 392, 433
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 33
BauI CACGAG 2 cut(s) 93, 371
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 37, 347
BciVI GTATCC 1 cut(s) 264
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 491, 535
BfmI CTRYAG 1 cut(s) 524
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 37, 347
BmgT120I GGNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 37, 347
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 491, 535
Bse1I ACTGG 2 cut(s) 229, 279
BseBI CCWGG 2 cut(s) 37, 347
BseGI GGATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 229, 279
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 2 cut(s) 235, 387
BsmAI GTCTC 2 cut(s) 491, 535
BsnI GGCC 2 cut(s) 235, 387
Bso31I GGTCTC 2 cut(s) 491, 535
Bsp143I GATC 4 cut(s) 84, 178, 506, 520
BspANI GGCC 2 cut(s) 235, 387
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 124
BspTNI GGTCTC 2 cut(s) 491, 535
BsrI ACTGG 2 cut(s) 229, 279
BssMI GATC 4 cut(s) 84, 178, 506, 520
BssSI CACGAG 2 cut(s) 93, 371
Bst2BI CACGAG 2 cut(s) 93, 371
Bst2UI CCWGG 2 cut(s) 37, 347
BstDEI CTNAG 1 cut(s) 324
BstEII GGTNACC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 4 cut(s) 87, 181, 509, 523
BstMAI GTCTC 2 cut(s) 491, 535
BstMBI GATC 4 cut(s) 84, 178, 506, 520
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 2 cut(s) 37, 347
BstPI GGTNACC 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 35, 345
BstSFI CTRYAG 1 cut(s) 524
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 348
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 235, 387
BtsCI GGATG 1 cut(s) 234
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 386
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 2 cut(s) 156, 356
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 35, 101, 174, 235, 387
CviKI_1 RGCY 5 cut(s) 35, 101, 174, 235, 387
CviQI GTAC 2 cut(s) 156, 356
DdeI CTNAG 1 cut(s) 324
DpnI GATC 4 cut(s) 86, 180, 508, 522
DpnII GATC 4 cut(s) 84, 178, 506, 520
Eco147I AGGCCT 1 cut(s) 235
Eco31I GGTCTC 2 cut(s) 491, 535
Eco57I CTGAAG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 35, 345
FaeI CATG 1 cut(s) 128
FaiI YATR 7 cut(s) 79, 81, 83, 126, 137, 216, 218
FatI CATG 1 cut(s) 124
FauNDI CATATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 235, 387
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 2 cut(s) 158, 515
Hpy188I TCNGA 2 cut(s) 265, 325
Hpy188III TCNNGA 5 cut(s) 93, 125, 371, 430, 455
Hpy8I GTNNAC 2 cut(s) 158, 515
HpyAV CCTTC 3 cut(s) 142, 146, 207
HpyCH4V TGCA 2 cut(s) 185, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 4 cut(s) 84, 178, 506, 520
Lsp1109I GCAGC 1 cut(s) 110
MabI ACCWGGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 86, 180, 508, 522
MboI GATC 4 cut(s) 84, 178, 506, 520
MboII GAAGA 3 cut(s) 140, 353, 552
MfeI CAATTG 1 cut(s) 161
MluCI AATT 7 cut(s) 63, 161, 365, 392, 433, 447, 488
MnlI CCTC 4 cut(s) 164, 225, 321, 367
MseI TTAA 2 cut(s) 362, 396
MspR9I CCNGG 2 cut(s) 37, 347
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 2 cut(s) 37, 347
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeI CATATG 1 cut(s) 216
NdeII GATC 4 cut(s) 84, 178, 506, 520
NlaIII CATG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 39
PagI TCATGA 1 cut(s) 124
PceI AGGCCT 1 cut(s) 235
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 35, 345
PspEI GGTNACC 1 cut(s) 39
PspGI CCWGG 2 cut(s) 35, 345
PspPI GGNCC 1 cut(s) 386
RsaI GTAC 2 cut(s) 157, 357
RsaNI GTAC 2 cut(s) 156, 356
SaqAI TTAA 2 cut(s) 362, 396
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 4 cut(s) 84, 178, 506, 520
Sau96I GGNCC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 37, 347
SetI ASST 8 cut(s) 41, 46, 157, 251, 322, 348, 402, 531
SexAI ACCWGGT 1 cut(s) 345
SfcI CTRYAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
Sse9I AATT 7 cut(s) 63, 161, 365, 392, 433, 447, 488
SseBI AGGCCT 1 cut(s) 235
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 35, 345
TasI AATT 7 cut(s) 63, 161, 365, 392, 433, 447, 488
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 362, 396
Tru9I TTAA 2 cut(s) 362, 396
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 141, 203
XapI RAATTY 4 cut(s) 63, 365, 392, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.