Rorug01G0079800

iron ion binding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
13008605 .. 13008775
171 bp
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UTR
Exon/CDS
Intron
Rorug01G0079800.1

Sequence Viewer

Length: 171 bp
ATGCATGACTTGATAGAAGCAATGGGTAGAGAAATAGTTCGCCAAGAGTCGCCAACTGAGCCTGGAAGACGTAGCAGACTGTGGTTTCATGAAGACGTTTACCATGTTTGTATATTTGATCAAACACTTGCGTGCTCTTTTTGGTTACAATACTTGCATCTTTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.84

Weight (kDa)

5.67

Isoelectric Point (pI)

101.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 73, 99
Bbv12I GWGCWC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 73, 99
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 27
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstV2I GAAGAC 2 cut(s) 73, 99
Cac8I GCNNGC 1 cut(s) 133
CciI TCATGA 1 cut(s) 88
CviAII CATG 3 cut(s) 5, 89, 104
CviJI RGCY 1 cut(s) 61
CviKI_1 RGCY 1 cut(s) 61
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 92, 107
FaiI YATR 4 cut(s) 6, 90, 105, 113
FatI CATG 3 cut(s) 4, 88, 103
FbaI TGATCA 1 cut(s) 118
FspEI CC 9 cut(s) 8, 9, 48, 56, 66, 67, 75, 116, 127
Hin1II CATG 3 cut(s) 8, 92, 107
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 70, 96
HpyCH4V TGCA 2 cut(s) 4, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 70, 96
Hsp92II CATG 3 cut(s) 8, 92, 107
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 48, 75
LweI GCATC 1 cut(s) 166
MaeII ACGT 2 cut(s) 70, 96
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 78, 104
MhlI GDGCHC 1 cut(s) 137
MlyI GAGTC 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 8, 92, 107
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 130
PagI TCATGA 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 36
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 130
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 137
SetI ASST 2 cut(s) 73, 99
SfaNI GCATC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 73, 99
TspDTI ATGAA 2 cut(s) 77, 105
XmnI GAANNNNTTC 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.