MD00G1154000.v1.1

iron ion binding

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
33660571 .. 33661384
814 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1154000.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGACATGTTCTCTGCAGGAAGCGAGACTTCAGCTACTACCTTAGAATGGGCAATGTCAGAGTTGATGAGAAACCCAAGAATCATGAAGAGGGCTCAAGCTGAAGTGAGACAGTCAGTCCTCCAATTTGAAGGGAAAAAAAGAAAAGTTATTGAAGGAGGAGATGTTCAAAAAATGGACTACTTGAAATCGGTGTTGAAAGAAACTCTGAGGTTACACTCTCCAGCCCCTTTGCTCCCAAGAGAAGCAAGGGACACGGTTCAAATAGGCGGATTCGAAGTACAAGTTAAATCAAAGGTAATTATTAATGCATGGGCAATAGGAAGAGACCCAGAGATATGGGGGGCAGATGCTGAGTGTTTTAAGCCAGAGAGATTTCATGGTTCTTCTGTTGACTTTAAGGGCTTTGACTTTGAGTTCACTCCATTTGGGGCTGGCAGAAGAATGTGTCCAGGCATGTCATTTGGTGTTACCATGGTTGAACTTGCCCTTGCTGAATTGCTCTACCGCCTCGATTGA

Protein Analysis

173

Amino Acids

19.4

Weight (kDa)

6.76

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 170 3.7e-51 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 270, 508
AcuI CTGAAG 2 cut(s) 15, 123
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 7 cut(s) 131, 155, 170, 187, 199, 263, 482
AhdI GACNNNNNGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 2 cut(s) 35, 101
AluI AGCT 2 cut(s) 35, 101
Alw26I GTCTC 3 cut(s) 20, 103, 321
AlwNI CAGNNNCTG 1 cut(s) 353
AseI ATTAAT 1 cut(s) 306
AsuII TTCGAA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 453
BcoDI GTCTC 3 cut(s) 20, 103, 321
BfmI CTRYAG 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 453
BmeRI GACNNNNNGTC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 200, 345
BseRI GAGGAG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 3 cut(s) 20, 103, 321
BsmFI GGGAC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 2 cut(s) 270, 508
BspCNI CTCAG 2 cut(s) 201, 346
BspHI TCATGA 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 114, 259
Bst6I CTCTTC 2 cut(s) 83, 319
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 3 cut(s) 43, 209, 354
BstDSI CCRYGG 1 cut(s) 474
BstMAI GTCTC 3 cut(s) 20, 103, 321
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 2 cut(s) 10, 460
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 436
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 84
Csp6I GTAC 1 cut(s) 281
CviAII CATG 6 cut(s) 7, 85, 312, 380, 457, 475
CviJI RGCY 7 cut(s) 35, 95, 101, 227, 367, 405, 434
CviKI_1 RGCY 7 cut(s) 35, 95, 101, 227, 367, 405, 434
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 3 cut(s) 43, 209, 354
DriI GACNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 83, 319
Eam1105I GACNNNNNGTC 1 cut(s) 116
EarI CTCTTC 2 cut(s) 83, 319
EciI GGCGGA 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 15, 123
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 6 cut(s) 10, 88, 315, 383, 460, 478
FaiI YATR 7 cut(s) 8, 86, 313, 340, 381, 458, 476
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 266
FatI CATG 6 cut(s) 6, 84, 311, 379, 456, 474
FriOI GRGCYC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 207
Hin1II CATG 6 cut(s) 10, 88, 315, 383, 460, 478
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 81, 273
Hpy166II GTNNAC 2 cut(s) 394, 420
Hpy188I TCNGA 2 cut(s) 61, 210
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 2 cut(s) 394, 420
HpyAV CCTTC 2 cut(s) 125, 149
HpyCH4III ACNGT 2 cut(s) 114, 259
HpyCH4V TGCA 2 cut(s) 17, 311
HpyF3I CTNAG 3 cut(s) 43, 209, 354
Hsp92II CATG 6 cut(s) 10, 88, 315, 383, 460, 478
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 7 cut(s) 3, 237, 345, 381, 420, 438, 465
LweI GCATC 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 213, 469
MboII GAAGA 4 cut(s) 100, 336, 378, 453
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 3 cut(s) 125, 300, 497
MnlI CCTC 4 cut(s) 84, 131, 152, 204
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 4 cut(s) 288, 306, 363, 399
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
NcoI CCATGG 1 cut(s) 474
NlaIII CATG 6 cut(s) 10, 88, 315, 383, 460, 478
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 2 cut(s) 10, 460
NspV TTCGAA 1 cut(s) 276
PagI TCATGA 1 cut(s) 84
PciI ACATGT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 81, 273
PscI ACATGT 1 cut(s) 6
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 4 cut(s) 288, 306, 363, 399
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 97
SetI ASST 5 cut(s) 37, 44, 103, 215, 300
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 3 cut(s) 125, 300, 497
SsiI CCGC 2 cut(s) 270, 508
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 114, 259
TaqI TCGA 2 cut(s) 276, 513
TasI AATT 3 cut(s) 125, 300, 497
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 2 cut(s) 81, 273
Tru1I TTAA 4 cut(s) 288, 306, 363, 399
Tru9I TTAA 4 cut(s) 288, 306, 363, 399
TspDTI ATGAA 2 cut(s) 101, 368
VspI ATTAAT 1 cut(s) 306
XceI RCATGY 2 cut(s) 10, 460
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.