Rroxscaffold_4G00315510

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000132
Physical Location & Seq
Reverse (-)
39830431 .. 39838782
8352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315510.1

Sequence Viewer

Length: 1653 bp
ATGAAGCCCCAAAAGATAAGTGCTTCTGTAATGGCGCCCCTACTGCTCCAAATCCAAAATATTCCTTCCCTTCCTCTCTATACTTCACTGGTCGCCCTAGTAATCCTGGTTCTTTGTTGGATGAGATTCAAAGCCACTCATATCCCGACACTACTTAAGTTGCCCCCGGGTCCAAGGAAGCTACCAGTTATAGGAAACTTGCTTCAGTTGGTAGGTGCATTACCACACCACTGCCTAAGAGACTTGGCCAGCAAGTATGGACCTATCATTCACCTCAGAGTGGGACAAGTATCGGTTGTAGTCATTTCATCACCTGAATTAACCAAAGAGCTGTTGCAGACCCAAGAGGCTATTTTCTCGCAGCGGCCTACTAGTGATCTTGCTGTGACAGCTTCCTCCAATGCTCTTTCAGGGGTCTTTTTCAGTCCCTACAATCATTTCTGGAGACAAATGCGCAGGATTAGTGTTTTGGAGCTCCTAAGTAGAAAGAGAGTGCTGTCCTATCGATCAATAAGAGAAGAAGAGGCATGGAATCTTGTTCAATCGATTAAGGATCATTATCAAACCAAGCTTGGTCATCTTAATCTTAGTGAGGTGATTTTCTCCATGCAAAACAATGTGATTGCCCGTGCAGCCTTAGGGAAGAAGTGCAAACATGGAAAGGAGTTTACAGCATTGATCAATGAGTCACTGCTCCTCGCCGGAGGCTTTGCCCTGGCTGATTTTTTCCCTTCCCTGAAATTCCTCCCTTATCTCACAGGTATCAGATCTGCCCTTGAGAAAATAAACAAAAAGGTCGACCGGATTCTTAATGATGTCATTAGTGAACATAAAGAGAAAACAATTGGCAGAGCTCATGATGCTGCCGATGAACAAGAAGATGCTCTTGTTGATGTCCTTCTTAAACTCCAAGACGCTGGTGGGCTTCAATTTGATCTCACAACAACCCACATCAAAGCTGTAACCCTGACTTGCTGGCTTCACATCCTCATTTTATACCAAATCACAACTTCTAAAACAAATATTGCTCTAGTTCATGAAATGTATGCCGGTGGAAGCGAAACTTCAGCAACTACCACAGAATGGGCAATGTCCGAACTCATGAGAAACCCAAAAGTAATGCAGAAAGCACAAGCAGAAGTGCGACAAGTTCTTGCCAGGAAGAGGAAAATCTATGAGGCCGACATAGAGAAAATGGAATACCTGAAGTTAGTAATACGTGAAACTCTACGGTTACATCCTCCAGCTACCTTAATTGCAAGAGAAGCAAGCAGCAGCACTAAGATCATTGGGTATGATATACCAGTGCAGACCAAAGTTTTAATCAATGCATGGGCAATGGGGAGAGATCCAACACATTGGGGTGCAGAAGCTGACCGCTTTCAGCCTGAGAGGTTCCAAGGTAGTGGTTCCATTGATTATAGAGGGTCCAATTTGGAATTTATTCCATTCGGAGCTGGGAAAAGAATATGTCCAGGCATAACATTTGGAACTGCAGCAGTGGAACTTGCACTTGCTCAACTGCTATATCACTTTGACTGGAAACTCCCCAGTGGGACCAAACCTGAACAACTTGACATGACAGAATCAGCGGGATGGAATACTAAGAGGAGGGATGATTTGTTTGTTGTGGCCATTCCTTTTCTACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

550

Amino Acids

61.64

Weight (kDa)

9.33

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 55 - 324 8.3e-34 Cytochrome P450
p450 PF00067 342 - 536 1.9e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 1083
AccI GTMKAC 1 cut(s) 798
AciI CCGC 3 cut(s) 364, 1378, 1592
AclWI GGATC 2 cut(s) 561, 1343
AcoI YGGCCR 2 cut(s) 246, 1632
AcsI RAATTY 2 cut(s) 740, 1439
AcuI CTGAAG 3 cut(s) 188, 1050, 1226
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 4 cut(s) 191, 280, 1083, 1164
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 130, 542, 929
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 4 cut(s) 105, 714, 1157, 1474
Alw21I GWGCWC 2 cut(s) 477, 856
Alw26I GTCTC 2 cut(s) 234, 439
AlwI GGATC 2 cut(s) 561, 1343
AlwNI CAGNNNCTG 1 cut(s) 1373
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 4 cut(s) 246, 365, 1179, 1632
ApeKI GCWGC 6 cut(s) 361, 632, 863, 1272, 1275, 1496
ApoI RAATTY 2 cut(s) 740, 1439
Asp700I GAANNNNTTC 1 cut(s) 1443
AspLEI GCGC 2 cut(s) 37, 456
AspS9I GGNCC 4 cut(s) 170, 260, 1428, 1557
AsuC2I CCSGG 2 cut(s) 167, 168
AsuHPI GGTGA 3 cut(s) 263, 303, 607
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 4 cut(s) 170, 260, 1428, 1557
AxyI CCTNAGG 1 cut(s) 637
BalI TGGCCA 2 cut(s) 248, 1634
BanI GGYRCC 1 cut(s) 34
BanII GRGCYC 2 cut(s) 477, 856
Bbv12I GWGCWC 2 cut(s) 477, 856
BbvI GCAGC 6 cut(s) 373, 644, 850, 1284, 1287, 1508
BccI CCATC 1 cut(s) 1590
BciT130I CCWGG 4 cut(s) 107, 716, 1159, 1476
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 2 cut(s) 167, 168
BcoDI GTCTC 2 cut(s) 234, 439
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 3 cut(s) 98, 372, 1031
BfmI CTRYAG 1 cut(s) 1494
BfoI RGCGCY 1 cut(s) 38
BfrI CTTAAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 767
BisI GCNGC 7 cut(s) 362, 365, 633, 864, 1273, 1276, 1497
BlsI GCNGC 7 cut(s) 363, 366, 634, 865, 1274, 1277, 1498
Bme1390I CCNGG 6 cut(s) 107, 167, 168, 716, 1159, 1476
Bme18I GGWCC 4 cut(s) 170, 260, 1428, 1557
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 4 cut(s) 170, 260, 1428, 1557
BmiI GGNNCC 6 cut(s) 36, 171, 1397, 1411, 1429, 1558
BmrFI CCNGG 6 cut(s) 107, 167, 168, 716, 1159, 1476
BmrI ACTGGG 1 cut(s) 1545
BmsI GCATC 2 cut(s) 850, 871
BmuI ACTGGG 1 cut(s) 1545
BpmI CTGGAG 2 cut(s) 463, 1227
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 2 cut(s) 167, 168
Bsa29I ATCGAT 2 cut(s) 505, 545
BsaAI YACGTR 1 cut(s) 1220
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 165, 166, 173, 714, 1399
BsaWI WCCGGW 1 cut(s) 801
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 280, 1083, 1164
Bse118I RCCGGY 1 cut(s) 1049
Bse1I ACTGG 5 cut(s) 93, 185, 1304, 1544, 1551
Bse21I CCTNAGG 1 cut(s) 637
Bse3DI GCAATG 2 cut(s) 1095, 1344
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 4 cut(s) 107, 716, 1159, 1476
BseCI ATCGAT 2 cut(s) 505, 545
BseDI CCNNGG 5 cut(s) 165, 166, 173, 714, 1399
BseGI GGATG 5 cut(s) 126, 984, 1237, 1601, 1621
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 4 cut(s) 191, 280, 1083, 1164
BseMI GCAATG 2 cut(s) 1095, 1344
BseMII CTCAG 2 cut(s) 289, 1380
BseNI ACTGG 5 cut(s) 93, 185, 1304, 1544, 1551
BseRI GAGGAG 2 cut(s) 686, 1624
BseXI GCAGC 6 cut(s) 373, 644, 850, 1284, 1287, 1508
BseYI CCCAGC 1 cut(s) 1457
BsgI GTGCAG 3 cut(s) 651, 1328, 1386
Bsh1285I CGRYCG 1 cut(s) 802
BshFI GGCC 4 cut(s) 248, 367, 1181, 1634
BshNI GGYRCC 1 cut(s) 34
BshVI ATCGAT 2 cut(s) 505, 545
BsiEI CGRYCG 1 cut(s) 802
BsiHKAI GWGCWC 2 cut(s) 477, 856
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 4 cut(s) 167, 702, 802, 1050
BslFI GGGAC 3 cut(s) 297, 411, 1570
BslI CCNNNNNNNGG 4 cut(s) 191, 280, 1083, 1164
BsmAI GTCTC 2 cut(s) 234, 439
BsmFI GGGAC 3 cut(s) 297, 411, 1570
BsnI GGCC 4 cut(s) 248, 367, 1181, 1634
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 477, 856
Bsp143I GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
BspACI CCGC 3 cut(s) 364, 1378, 1592
BspANI GGCC 4 cut(s) 248, 367, 1181, 1634
BspCNI CTCAG 2 cut(s) 288, 1381
BspDI ATCGAT 2 cut(s) 505, 545
BspHI TCATGA 3 cut(s) 856, 1036, 1101
BspLI GGNNCC 6 cut(s) 36, 171, 1397, 1411, 1429, 1558
BspMAI CTGCAG 1 cut(s) 1498
BspPI GGATC 2 cut(s) 561, 1343
BspT107I GGYRCC 1 cut(s) 34
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 1095, 1344
BsrFI RCCGGY 1 cut(s) 1049
BsrI ACTGG 5 cut(s) 93, 185, 1304, 1544, 1551
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 5 cut(s) 165, 166, 173, 714, 1399
BssMI GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 173, 1399
Bst2UI CCWGG 4 cut(s) 107, 716, 1159, 1476
Bst4CI ACNGT 1 cut(s) 1233
Bst6I CTCTTC 2 cut(s) 516, 1157
BstACI GRCGYC 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 1220
BstC8I GCNNGC 3 cut(s) 250, 977, 1270
BstDEI CTNAG 8 cut(s) 236, 275, 479, 587, 637, 1281, 1389, 1605
BstF5I GGATG 5 cut(s) 126, 984, 1237, 1601, 1621
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 2 cut(s) 37, 456
BstKTI GATC 8 cut(s) 379, 509, 556, 681, 770, 937, 1287, 1351
BstMAI GTCTC 2 cut(s) 234, 439
BstMBI GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
BstMCI CGRYCG 1 cut(s) 802
BstMWI GCNNNNNNNGC 5 cut(s) 43, 389, 632, 860, 1265
BstNI CCWGG 4 cut(s) 107, 716, 1159, 1476
BstSCI CCNGG 6 cut(s) 105, 165, 166, 714, 1157, 1474
BstSFI CTRYAG 1 cut(s) 1494
BstV1I GCAGC 6 cut(s) 373, 644, 850, 1284, 1287, 1508
BstX2I RGATCY 2 cut(s) 767, 1348
BstXI CCANNNNNNTGG 3 cut(s) 917, 1359, 1406
BstYI RGATCY 2 cut(s) 767, 1348
Bsu15I ATCGAT 2 cut(s) 505, 545
Bsu36I CCTNAGG 1 cut(s) 637
BsuRI GGCC 4 cut(s) 248, 367, 1181, 1634
BsuTUI ATCGAT 2 cut(s) 505, 545
BtsCI GGATG 5 cut(s) 126, 984, 1237, 1601, 1621
BtsI GCAGTG 3 cut(s) 229, 689, 1506
BtsIMutI CAGTG 6 cut(s) 86, 229, 689, 1311, 1506, 1558
Cac8I GCNNGC 3 cut(s) 250, 977, 1270
CaiI CAGNNNCTG 1 cut(s) 1373
CciI TCATGA 3 cut(s) 856, 1036, 1101
CfoI GCGC 2 cut(s) 37, 456
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 4 cut(s) 170, 260, 1428, 1557
Cfr9I CCCGGG 1 cut(s) 166
ClaI ATCGAT 2 cut(s) 505, 545
CseI GACGC 1 cut(s) 923
CviAII CATG 8 cut(s) 528, 607, 656, 857, 1037, 1102, 1332, 1579
DdeI CTNAG 8 cut(s) 236, 275, 479, 587, 637, 1281, 1389, 1605
DinI GGCGCC 1 cut(s) 36
DpnI GATC 8 cut(s) 378, 508, 555, 680, 769, 936, 1286, 1350
DpnII GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
EaeI YGGCCR 2 cut(s) 246, 1632
Eam1104I CTCTTC 2 cut(s) 516, 1157
EarI CTCTTC 2 cut(s) 516, 1157
Ecl136II GAGCTC 2 cut(s) 475, 854
Eco130I CCWWGG 2 cut(s) 173, 1399
Eco24I GRGCYC 2 cut(s) 477, 856
Eco47I GGWCC 4 cut(s) 170, 260, 1428, 1557
Eco53kI GAGCTC 2 cut(s) 475, 854
Eco57I CTGAAG 3 cut(s) 188, 1050, 1226
Eco81I CCTNAGG 1 cut(s) 637
Eco88I CYCGRG 1 cut(s) 166
EcoICRI GAGCTC 2 cut(s) 475, 854
EcoRII CCWGG 4 cut(s) 105, 714, 1157, 1474
EcoT14I CCWWGG 2 cut(s) 173, 1399
EcoT22I ATGCAT 1 cut(s) 1333
EcoT38I GRGCYC 2 cut(s) 477, 856
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 173, 1399
FaeI CATG 8 cut(s) 531, 610, 659, 860, 1040, 1105, 1335, 1582
FalI AAGNNNNNCTT 4 cut(s) 870, 902, 1048, 1080
FaqI GGGAC 3 cut(s) 297, 411, 1570
FatI CATG 8 cut(s) 527, 606, 655, 856, 1036, 1101, 1331, 1578
FauI CCCGC 1 cut(s) 1585
FbaI TGATCA 1 cut(s) 678
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 7 cut(s) 362, 365, 633, 864, 1273, 1276, 1497
FokI GGATG 5 cut(s) 133, 971, 1224, 1608, 1628
FriOI GRGCYC 2 cut(s) 477, 856
Fsp4HI GCNGC 7 cut(s) 362, 365, 633, 864, 1273, 1276, 1497
FspBI CTAG 3 cut(s) 98, 372, 1031
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 2 cut(s) 36, 455
GluI GCNGC 7 cut(s) 362, 365, 633, 864, 1273, 1276, 1497
GsaI CCCAGC 1 cut(s) 1461
GsuI CTGGAG 2 cut(s) 463, 1227
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 4 cut(s) 248, 367, 1181, 1634
HapII CCGG 4 cut(s) 167, 702, 802, 1050
HgaI GACGC 1 cut(s) 923
HhaI GCGC 2 cut(s) 37, 456
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 8 cut(s) 531, 610, 659, 860, 1040, 1105, 1335, 1582
Hin6I GCGC 2 cut(s) 35, 454
HinP1I GCGC 2 cut(s) 35, 454
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 126, 532, 686, 805, 1586
HpaII CCGG 4 cut(s) 167, 702, 802, 1050
HphI GGTGA 3 cut(s) 263, 303, 607
Hpy166II GTNNAC 3 cut(s) 669, 799, 827
Hpy188I TCNGA 4 cut(s) 278, 767, 1096, 1454
Hpy188III TCNNGA 5 cut(s) 145, 442, 857, 1037, 1102
Hpy8I GTNNAC 3 cut(s) 669, 799, 827
HpyAV CCTTC 4 cut(s) 75, 80, 741, 908
HpyCH4III ACNGT 1 cut(s) 1233
HpyCH4IV ACGT 1 cut(s) 1219
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 389, 632, 860, 1265
HpyF3I CTNAG 8 cut(s) 236, 275, 479, 587, 637, 1281, 1389, 1605
HpySE526I ACGT 1 cut(s) 1219
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 8 cut(s) 531, 610, 659, 860, 1040, 1105, 1335, 1582
HspAI GCGC 2 cut(s) 35, 454
KasI GGCGCC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
LmnI GCTCC 5 cut(s) 51, 472, 480, 699, 1454
Lsp1109I GCAGC 6 cut(s) 373, 644, 850, 1284, 1287, 1508
LweI GCATC 2 cut(s) 850, 871
MaeI CTAG 3 cut(s) 98, 372, 1031
MaeII ACGT 1 cut(s) 1219
MaeIII GTNAC 4 cut(s) 385, 687, 961, 1233
MalI GATC 8 cut(s) 378, 508, 555, 680, 769, 936, 1286, 1350
MboI GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
MboII GAAGA 5 cut(s) 530, 533, 655, 890, 1174
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 2 cut(s) 767, 1348
MhlI GDGCHC 2 cut(s) 477, 856
MlsI TGGCCA 2 cut(s) 248, 1634
MluCI AATT 7 cut(s) 317, 740, 843, 929, 1254, 1432, 1439
MluNI TGGCCA 2 cut(s) 248, 1634
Mly113I GGCGCC 1 cut(s) 35
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 2 cut(s) 98, 1376
Mox20I TGGCCA 2 cut(s) 248, 1634
Mph1103I ATGCAT 1 cut(s) 1333
MroXI GAANNNNTTC 1 cut(s) 1443
MscI TGGCCA 2 cut(s) 248, 1634
MseI TTAA 8 cut(s) 156, 320, 549, 582, 810, 903, 1253, 1322
MslI CAYNNNNRTG 1 cut(s) 1362
Msp20I TGGCCA 2 cut(s) 248, 1634
MspA1I CMGCKG 2 cut(s) 364, 1592
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 4 cut(s) 167, 702, 802, 1050
MspR9I CCNGG 6 cut(s) 107, 167, 168, 716, 1159, 1476
MunI CAATTG 1 cut(s) 843
MvaI CCWGG 4 cut(s) 107, 716, 1159, 1476
MwoI GCNNNNNNNGC 5 cut(s) 43, 389, 632, 860, 1265
NarI GGCGCC 1 cut(s) 35
NciI CCSGG 2 cut(s) 167, 168
NdeII GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
NlaIII CATG 8 cut(s) 531, 610, 659, 860, 1040, 1105, 1335, 1582
NlaIV GGNNCC 6 cut(s) 36, 171, 1397, 1411, 1429, 1558
NmuCI GTSAC 2 cut(s) 385, 687
NsbI TGCGCA 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 1333
PagI TCATGA 3 cut(s) 856, 1036, 1101
PdmI GAANNNNTTC 1 cut(s) 1443
PfeI GAWTC 4 cut(s) 126, 532, 805, 1586
PflMI CCANNNNNTGG 1 cut(s) 1083
PkrI GCNGC 7 cut(s) 363, 366, 634, 865, 1274, 1277, 1498
PleI GAGTC 1 cut(s) 694
PluTI GGCGCC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 694
Ppu21I YACGTR 1 cut(s) 1220
Psp124BI GAGCTC 2 cut(s) 477, 856
Psp6I CCWGG 4 cut(s) 105, 714, 1157, 1474
PspFI CCCAGC 1 cut(s) 1457
PspGI CCWGG 4 cut(s) 105, 714, 1157, 1474
PspN4I GGNNCC 6 cut(s) 36, 171, 1397, 1411, 1429, 1558
PspPI GGNCC 4 cut(s) 170, 260, 1428, 1557
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstI CTGCAG 1 cut(s) 1498
PstNI CAGNNNCTG 1 cut(s) 1373
PsuI RGATCY 2 cut(s) 767, 1348
RseI CAYNNNNRTG 1 cut(s) 1362
SacI GAGCTC 2 cut(s) 477, 856
SalI GTCGAC 1 cut(s) 797
SaqAI TTAA 8 cut(s) 156, 320, 549, 582, 810, 903, 1253, 1322
SatI GCNGC 7 cut(s) 362, 365, 633, 864, 1273, 1276, 1497
Sau3AI GATC 8 cut(s) 376, 506, 553, 678, 767, 934, 1284, 1348
Sau96I GGNCC 4 cut(s) 170, 260, 1428, 1557
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 6 cut(s) 107, 167, 168, 716, 1159, 1476
SduI GDGCHC 2 cut(s) 477, 856
SfaNI GCATC 2 cut(s) 850, 871
SfcI CTRYAG 1 cut(s) 1494
SfoI GGCGCC 1 cut(s) 36
SinI GGWCC 4 cut(s) 170, 260, 1428, 1557
SmaI CCCGGG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 1362
SmlI CTYRAG 2 cut(s) 155, 776
SmoI CTYRAG 2 cut(s) 155, 776
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 7 cut(s) 317, 740, 843, 929, 1254, 1432, 1439
SsiI CCGC 3 cut(s) 364, 1378, 1592
SspDI GGCGCC 1 cut(s) 34
SspI AATATT 2 cut(s) 61, 1024
SspMI CTAG 3 cut(s) 98, 372, 1031
SstI GAGCTC 2 cut(s) 477, 856
StyD4I CCNGG 6 cut(s) 105, 165, 166, 714, 1157, 1474
StyI CCWWGG 2 cut(s) 173, 1399
TaaI ACNGT 1 cut(s) 1233
TaiI ACGT 1 cut(s) 1222
TaqI TCGA 3 cut(s) 505, 545, 798
TasI AATT 7 cut(s) 317, 740, 843, 929, 1254, 1432, 1439
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 4 cut(s) 126, 532, 805, 1586
Tru1I TTAA 8 cut(s) 156, 320, 549, 582, 810, 903, 1253, 1322
Tru9I TTAA 8 cut(s) 156, 320, 549, 582, 810, 903, 1253, 1322
TscAI CASTG 6 cut(s) 93, 236, 696, 1311, 1506, 1558
TseFI GTSAC 2 cut(s) 385, 687
TseI GCWGC 6 cut(s) 361, 632, 863, 1272, 1275, 1496
Tsp45I GTSAC 2 cut(s) 385, 687
TspDTI ATGAA 5 cut(s) 17, 297, 885, 1025, 1053
TspMI CCCGGG 1 cut(s) 166
TspRI CASTG 6 cut(s) 93, 236, 696, 1311, 1506, 1558
Van91I CCANNNNNTGG 1 cut(s) 1083
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 4 cut(s) 170, 260, 1428, 1557
XapI RAATTY 2 cut(s) 740, 1439
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XmaI CCCGGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 1443
XspI CTAG 3 cut(s) 98, 372, 1031
Zsp2I ATGCAT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.