RchiOBHm_Chr3g0447781

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
343611 .. 344023
413 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41524

Sequence Viewer

Length: 324 bp
ATGGACATGATCCTTGATGAAATCATCAGTGATCATAAACTAGTATTCAAGAAAAAGAGTACCATTATTGCAGCAACAGCAGCAGCTGGTGAAGATCATCTACATGAAGATCAAGATCTAGTGGATGTGCTTCTTCAACTTCAAGAGTCTAGTGACCTCCAATTCCAACTCACAACCGACCATATCAAAGCTGTCATTATGGAGATGTACTCTACTGGAAGTGAGACTTCAGCATCTACTATAGAGTGGACAATATCGGAACTTATGAAAAATCCAAGAGCAATGGAGAAAGCACAAGCCGAGATACGCCAAGTTGTTGCATGA
Functional Annotation

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

4.6

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 12 - 106 3.5e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 61, 209
AgsI TTSAA 3 cut(s) 49, 137, 143
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 2 cut(s) 86, 191
AluI AGCT 2 cut(s) 86, 191
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 71, 80, 83
AsuHPI GGTGA 1 cut(s) 101
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbvI GCAGC 3 cut(s) 83, 92, 95
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 3 cut(s) 41, 119, 150
BfmI CTRYAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 72, 81, 84
BlsI GCNGC 3 cut(s) 73, 82, 85
BmsI GCATC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BsaBI GATNNNNATC 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 114
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 114
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 83, 92, 95
BsmAI GTCTC 1 cut(s) 218
Bsp143I GATC 5 cut(s) 9, 31, 94, 109, 115
BspPI GGATC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 220
BssMI GATC 5 cut(s) 9, 31, 94, 109, 115
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 5 cut(s) 12, 34, 97, 112, 118
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 5 cut(s) 9, 31, 94, 109, 115
BstMWI GCNNNNNNNGC 2 cut(s) 77, 80
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 83, 92, 95
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 86
Csp6I GTAC 2 cut(s) 60, 208
CviAII CATG 3 cut(s) 7, 104, 321
CviJI RGCY 3 cut(s) 86, 191, 299
CviKI_1 RGCY 3 cut(s) 86, 191, 299
CviQI GTAC 2 cut(s) 60, 208
DpnI GATC 5 cut(s) 11, 33, 96, 111, 117
DpnII GATC 5 cut(s) 9, 31, 94, 109, 115
Eco57I CTGAAG 1 cut(s) 213
FaeI CATG 3 cut(s) 10, 107, 324
FaiI YATR 8 cut(s) 8, 36, 105, 183, 200, 242, 266, 322
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FatI CATG 3 cut(s) 6, 103, 320
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 72, 81, 84
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 72, 81, 84
FspBI CTAG 3 cut(s) 41, 119, 150
GluI GCNGC 3 cut(s) 72, 81, 84
Hin1II CATG 3 cut(s) 10, 107, 324
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 49, 113, 143
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 71, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 80
Hsp92II CATG 3 cut(s) 10, 107, 324
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 5 cut(s) 9, 31, 94, 109, 115
LpnPI CCDG 2 cut(s) 72, 201
Lsp1109I GCAGC 3 cut(s) 83, 92, 95
LweI GCATC 1 cut(s) 242
MaeI CTAG 3 cut(s) 41, 119, 150
MaeIII GTNAC 1 cut(s) 152
MalI GATC 5 cut(s) 11, 33, 96, 111, 117
MboI GATC 5 cut(s) 9, 31, 94, 109, 115
MboII GAAGA 3 cut(s) 104, 119, 125
MflI RGATCY 1 cut(s) 115
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 77, 80
NdeII GATC 5 cut(s) 9, 31, 94, 109, 115
NlaIII CATG 3 cut(s) 10, 107, 324
NmuCI GTSAC 1 cut(s) 152
PkrI GCNGC 3 cut(s) 73, 82, 85
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 61, 209
RsaNI GTAC 2 cut(s) 60, 208
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 3 cut(s) 72, 81, 84
Sau3AI GATC 5 cut(s) 9, 31, 94, 109, 115
SchI GAGTC 1 cut(s) 155
SetI ASST 3 cut(s) 88, 159, 193
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 102
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 1 cut(s) 161
SspMI CTAG 3 cut(s) 41, 119, 150
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 207
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 71, 80, 83
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 33, 120, 281
TspRI CASTG 1 cut(s) 34
XspI CTAG 3 cut(s) 41, 119, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.