Rmu_co8268883.1_g000001

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8268883.1
OG0000132
Physical Location & Seq
Forward (+)
115 .. 813
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8268883.1_g000001.1.cds

Sequence Viewer

Length: 699 bp
atgatgcacctcaaacttggacaagtatcagccatcatcatatcatcacctgacttagccaagcaagtggtaaagattttctcagaccgaccagctgattttcttgctgtggaaatcatgtcttataattattcaggcatagttggtagtccttgtaatgattactggagagaaatgcgcaaggtttgtgccttggagctcctaagtgcaaagcgtgtgcagtcgttttcatcattgagagaagaagagacatggaatcttgttcagtcaattactcaattgtcacagccaatcaaccttagcgagatgattttctccactgtaaacagcattactgctcgtgcagccttaggaaaaaaatgcagacaccaacaagagtttacatcattggtccgcgaaacgattaggcttactacagcctttggtgtgccagatctgttcccttcgctccaattcctcaatcatgtcacagggaccaagtatgccgttgaaagattgcatggaaagatggacatgattcttgttgatattatcaattatcacaaacaagtactacagagccagagggcatccggtgaaaatcatcagcagaaagatcaagatctggtcaacgtgcttctacaacttcaagagtctggtgaacttcaattccaactcacagccaaccatgtcaaagctataatcttggtaagaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

232

Amino Acids

26.33

Weight (kDa)

8.75

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
Acc16I TGCGCA 1 cut(s) 179
AccII CGCG 1 cut(s) 396
AciI CCGC 1 cut(s) 394
AfaI GTAC 1 cut(s) 552
AgsI TTSAA 3 cut(s) 491, 629, 647
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
AluBI AGCT 3 cut(s) 95, 199, 677
AluI AGCT 3 cut(s) 95, 199, 677
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 391, 474
AsuHPI GGTGA 3 cut(s) 39, 587, 650
AvaII GGWCC 2 cut(s) 391, 474
AxyI CCTNAGG 1 cut(s) 349
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 41, 502
BceAI ACGGC 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 2 cut(s) 414, 554
BglII AGATCT 2 cut(s) 433, 601
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 391, 474
BmgT120I GGNCC 2 cut(s) 391, 474
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 600
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 572
Bse1I ACTGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 569
BseJI GATNNNNATC 1 cut(s) 600
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 239, 363
Bsh1236I CGCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 433, 595, 601
BspACI CCGC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 95
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 475
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 433, 595, 601
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 5 cut(s) 55, 82, 203, 299, 349
BstF5I GGATG 1 cut(s) 569
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 436, 598, 604
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 433, 595, 601
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstSFI CTRYAG 2 cut(s) 414, 554
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 433, 601
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 2 cut(s) 433, 601
Bsu36I CCTNAGG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 318
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 391, 474
Csp6I GTAC 1 cut(s) 551
CviAII CATG 6 cut(s) 118, 252, 464, 500, 514, 668
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 5 cut(s) 55, 82, 203, 299, 349
DpnI GATC 3 cut(s) 435, 597, 603
DpnII GATC 3 cut(s) 433, 595, 601
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 391, 474
Eco53kI GAGCTC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 121, 255, 467, 503, 517, 671
FaqI GGGAC 1 cut(s) 487
FatI CATG 6 cut(s) 117, 251, 463, 499, 513, 667
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 345
FspI TGCGCA 1 cut(s) 179
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 187
HapII CCGG 1 cut(s) 573
HhaI GCGC 1 cut(s) 180
Hin1II CATG 6 cut(s) 121, 255, 467, 503, 517, 671
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 3 cut(s) 256, 517, 632
HpaII CCGG 1 cut(s) 573
HphI GGTGA 3 cut(s) 39, 587, 650
Hpy166II GTNNAC 4 cut(s) 325, 381, 610, 641
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 599, 629
Hpy8I GTNNAC 4 cut(s) 325, 381, 610, 641
HpyAV CCTTC 1 cut(s) 453
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 6 cut(s) 7, 209, 220, 344, 363, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 5 cut(s) 55, 82, 203, 299, 349
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 6 cut(s) 121, 255, 467, 503, 517, 671
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 433, 595, 601
LmnI GCTCC 3 cut(s) 196, 204, 453
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 578
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 282, 466
MalI GATC 3 cut(s) 435, 597, 603
MboI GATC 3 cut(s) 433, 595, 601
MboII GAAGA 2 cut(s) 254, 257
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 2 cut(s) 433, 601
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 6 cut(s) 127, 270, 278, 452, 535, 647
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 3 cut(s) 20, 467, 558
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 278
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 344
NdeII GATC 3 cut(s) 433, 595, 601
NlaIII CATG 6 cut(s) 121, 255, 467, 503, 517, 671
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 2 cut(s) 282, 466
NsbI TGCGCA 1 cut(s) 179
PfeI GAWTC 2 cut(s) 256, 517
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
PsiI TTATAA 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 2 cut(s) 391, 474
PsuI RGATCY 2 cut(s) 433, 601
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
SacI GAGCTC 1 cut(s) 201
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 433, 595, 601
Sau96I GGNCC 2 cut(s) 391, 474
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 1 cut(s) 641
SduI GDGCHC 1 cut(s) 201
SetI ASST 8 cut(s) 12, 52, 97, 186, 201, 300, 615, 679
SfaNI GCATC 1 cut(s) 578
SfcI CTRYAG 2 cut(s) 414, 554
SinI GGWCC 2 cut(s) 391, 474
Sse9I AATT 6 cut(s) 127, 270, 278, 452, 535, 647
SsiI CCGC 1 cut(s) 394
SstI GAGCTC 1 cut(s) 201
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 615
TaqII GACCGA 1 cut(s) 102
TasI AATT 6 cut(s) 127, 270, 278, 452, 535, 647
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 2 cut(s) 256, 517
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 2 cut(s) 282, 466
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 2 cut(s) 282, 466
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 391, 474
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.