RchiOBHm_Chr5g0043231

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000132
Physical Location & Seq
Reverse (-)
38171033 .. 38171449
417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32155

Sequence Viewer

Length: 417 bp
ATGGACCTCCAGTTCTCTTCCTTCCATGTCATACTTACCTTTTCTCTCTTTGTGATTATGGTACTCAAAATAGCAAGCAGAGGCAAAACCAAAAGCTCCAGTTCAAATCTACCACCAGGACCACGCAAGCTACCCTTTATAGGGAACATCCACCAGCTTGCTGGATCTCTACCCCATCATAGTCTGCGAAACTTGGCCAAGAAATATGGACCCTTTATGCACCTAAGGCTTGGAGAAGTTTCCACCGTAGTTGTTTCATCAGCAGAGTTTGCCAGAGAGGTGATGAAAACTCACGACGCTACTTTTGCATCAAGGCCCCATCTCCTTGCTGCAACCATCGTGTCTTACAACGCCACAAACATTGTGTTTGCAAAATATGGTGATTACTGGAGACAACTGCGAAAATTTGCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

138

Amino Acids

15.47

Weight (kDa)

10.48

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 38 - 137 2.3e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 404
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 140, 141
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 115
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 96, 130, 157
AluI AGCT 3 cut(s) 96, 130, 157
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 172
AoxI GGCC 2 cut(s) 195, 314
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 4 cut(s) 4, 119, 209, 315
AsuHPI GGTGA 2 cut(s) 292, 392
AvaII GGWCC 3 cut(s) 4, 119, 209
AxyI CCTNAGG 1 cut(s) 224
BalI TGGCCA 1 cut(s) 197
BbvI GCAGC 1 cut(s) 316
BccI CCATC 3 cut(s) 183, 327, 344
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 415
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 3 cut(s) 4, 119, 209
BmgT120I GGNCC 4 cut(s) 4, 119, 209, 315
BmiI GGNNCC 2 cut(s) 211, 317
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 317
BpmI CTGGAG 2 cut(s) 82, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 141
Bse1I ACTGG 3 cut(s) 10, 99, 392
Bse21I CCTNAGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 140, 141
BseNI ACTGG 3 cut(s) 10, 99, 392
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 2 cut(s) 197, 316
BslI CCNNNNNNNGG 2 cut(s) 140, 141
BsmAI GTCTC 1 cut(s) 385
BsnI GGCC 2 cut(s) 197, 316
Bsp143I GATC 1 cut(s) 164
BspANI GGCC 2 cut(s) 197, 316
BspLI GGNNCC 2 cut(s) 211, 317
BspPI GGATC 1 cut(s) 172
BsrI ACTGG 3 cut(s) 10, 99, 392
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 76, 128, 159
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 3 cut(s) 226, 269, 305
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 224
BsuRI GGCC 2 cut(s) 197, 316
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 76, 128, 159
Cfr13I GGNCC 4 cut(s) 4, 119, 209, 315
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 62
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 343, 378
CviAII CATG 1 cut(s) 26
CviJI RGCY 6 cut(s) 96, 130, 157, 197, 229, 316
CviKI_1 RGCY 6 cut(s) 96, 130, 157, 197, 229, 316
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 224
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco47I GGWCC 3 cut(s) 4, 119, 209
Eco81I CCTNAGG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 29
FaiI YATR 8 cut(s) 27, 32, 59, 140, 180, 207, 218, 378
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 415
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 2 cut(s) 82, 409
HaeIII GGCC 2 cut(s) 197, 316
HgaI GACGC 1 cut(s) 305
Hin1II CATG 1 cut(s) 29
HphI GGTGA 2 cut(s) 292, 392
Hpy188III TCNNGA 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 5 cut(s) 220, 308, 332, 371, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 269, 305
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 8 cut(s) 23, 102, 112, 129, 147, 167, 286, 373
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 415
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 1 cut(s) 9
MflI RGATCY 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 404
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 3 cut(s) 17, 74, 271
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 226, 269, 305
NdeII GATC 1 cut(s) 164
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 2 cut(s) 211, 317
PkrI GCNGC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 211, 317
PspPI GGNCC 4 cut(s) 4, 119, 209, 315
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 4 cut(s) 4, 119, 209, 315
ScrFI CCNGG 1 cut(s) 117
SetI ASST 7 cut(s) 9, 41, 98, 132, 159, 225, 282
SfaNI GCATC 1 cut(s) 317
SinI GGWCC 3 cut(s) 4, 119, 209
Sse9I AATT 1 cut(s) 404
SspMI CTAG 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 247
TasI AATT 1 cut(s) 404
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 246, 299
VpaK11BI GGWCC 3 cut(s) 4, 119, 209
XapI RAATTY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.