Rorug05G0286900

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
32915374 .. 32915840
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0286900.1

Sequence Viewer

Length: 342 bp
ATGGCTGATTCAACCTATCCCACCACCGTCGTCGATGATCAGATCACCGCTGCTACCACGAAGCTCAACAACCCCTATCAAGACCTCAATGCTCCAACTAAGAGGCTCTACTGCCTCACAACTTCGCTTGATGTTGAACAGGACCCCTTTGTCCAAATCTCTCTCATTCACATGTACTCGGCTTGTGGCAATTTGATGCTTGCACGCCAAGTATTTGATGAAATTACCCAACCAGATTTGCTATCTTGGAATTCCATCATAGATGCATATGCGAAAGTGGGTTTGATTGATGCTGCAGGAGAGGTGTTCGATGAAATGCCCAAGAGAAATGTGATCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

4.23

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 77 - 106 2.3e-06 PPR repeat
PPR_2 PF13041 78 - 111 3.7e-08 PPR repeat family
PPR PF01535 82 - 111 4.4e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AciI CCGC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 12, 137
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 50, 293
ApoI RAATTY 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 37, 280
BccI CCATC 1 cut(s) 263
BclI TGATCA 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 3 cut(s) 186, 253, 280
BseXI GCAGC 2 cut(s) 37, 280
Bsp143I GATC 3 cut(s) 37, 42, 333
BspACI CCGC 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 298
BssMI GATC 3 cut(s) 37, 42, 333
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 201, 205
BstDEI CTNAG 2 cut(s) 99, 339
BstKTI GATC 3 cut(s) 40, 45, 336
BstMBI GATC 3 cut(s) 37, 42, 333
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 37, 280
Cac8I GCNNGC 2 cut(s) 201, 205
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 5, 64, 106, 182
CviKI_1 RGCY 4 cut(s) 5, 64, 106, 182
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 99, 339
DpnI GATC 3 cut(s) 39, 44, 335
DpnII GATC 3 cut(s) 37, 42, 333
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 173, 260, 268, 270
FatI CATG 1 cut(s) 171
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 51, 294
Fsp4HI GCNGC 2 cut(s) 51, 294
GluI GCNGC 2 cut(s) 51, 294
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 32, 35
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 203, 266, 296
HpyF3I CTNAG 2 cut(s) 99, 339
Hsp92II CATG 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 37, 42, 333
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 125, 246, 282
Lsp1109I GCAGC 2 cut(s) 37, 280
LweI GCATC 3 cut(s) 186, 253, 280
MalI GATC 3 cut(s) 39, 44, 335
MboI GATC 3 cut(s) 37, 42, 333
MluCI AATT 3 cut(s) 190, 222, 250
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 4 cut(s) 95, 96, 125, 295
Mph1103I ATGCAT 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 50
NdeI CATATG 1 cut(s) 268
NdeII GATC 3 cut(s) 37, 42, 333
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 52, 295
PpuMI RGGWCCY 1 cut(s) 142
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 170
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 3 cut(s) 37, 42, 333
Sau96I GGNCC 1 cut(s) 142
SetI ASST 4 cut(s) 17, 66, 87, 306
SfaNI GCATC 3 cut(s) 186, 253, 280
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 3 cut(s) 190, 222, 250
SsiI CCGC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 33, 309
TasI AATT 3 cut(s) 190, 222, 250
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 8
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 2 cut(s) 234, 327
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 175
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.