Rh5AG357000

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
59268538 .. 59269889
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG357000.1

Sequence Viewer

Length: 951 bp
ATGCACCAACTTGTCGGTTCTATACCTCATCACATCTTGAGAGATTTGGCGAACATCTATGGACCCCTTATGCACTTGCAGCCTAGTGAAGTTTCCACTGTTGTTGTCTCCACACCAGAAGCTGCCAAAGAGATTATGAGAACACATGACGACATCTTTGCTTTTAGGCCACTCCTGCTTACTCCGGATATCATCTCTTATGGTGGTGCAGGCATTGCCTCTGCTCCATATGGAGAATACTGGAGTCAAATGCGCAAGATCTGCAATTCAGTGCTGTTGAACTCAAAAAGGGTGGAGTCATTTCACTTGATCAAGGAAGAAGAGGTCATAAAAGTTACCAAGACTAGAGTCATGGATGGAGCAAATGATTTGCTAAGCGTTCTTCTAAACCTGCAGCAACTCGGTTCAATTGTTGCATTTCAAGACCTTTTTACCACTAGGAGTGAAACATTATCTTCAACTGTTGAGTGGGCAATGTTGGAAATGGTAAAAACGCCACGAGTGATGGAAAAGGCACAAGCAGAGGTGGGGCAAGTCTTTGGTGCTAAAGGAAATGTCAATGAACCAAGTCTTCAGCAACTGAAATTCCTGAAGGTGGTGATCAAAGAGACTTTGAGATTACACCCACCTCTTCCTCTACTGCTTCCAAAAGAATGTAGTGAAAGCTGTGAGATTAATGGATATGGGATATTGGTGAAAATCAAAGTGATTGTGAATGCATGGGTGATTGGGAGAGAGCCCAAGCATTGGACAGAAGCAGAAATATTTCATCCAGAGAGATTCTTTGATAGTTGCATTGATCACAGGGGAGCTAATATTGAATTCATACCATTTGGTGCAGGAAGGAGGATATGTCCTGGAATGTCATTTGCTACACCCAACATTGAACTCCATTTGAACGACTACTCTTCCATTTCAACTGGAAGATCCCGGAAGAGGGTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

316

Amino Acids

35.53

Weight (kDa)

7.18

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 123 6.9e-12 Cytochrome P450
p450 PF00067 142 - 299 1.5e-48 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 399
AccB7I CCANNNNNTGG 1 cut(s) 747
AccIII TCCGGA 1 cut(s) 184
AclWI GGATC 1 cut(s) 921
AcsI RAATTY 2 cut(s) 584, 821
AcuI CTGAAG 2 cut(s) 557, 611
AfiI CCNNNNNNNGG 4 cut(s) 595, 747, 936, 937
AgsI TTSAA 8 cut(s) 280, 408, 422, 459, 821, 887, 898, 918
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 3 cut(s) 122, 666, 812
AluI AGCT 3 cut(s) 122, 666, 812
Alw26I GTCTC 2 cut(s) 112, 602
AlwI GGATC 1 cut(s) 921
AlwNI CAGNNNCTG 2 cut(s) 122, 580
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 79, 122, 394
ApoI RAATTY 2 cut(s) 584, 821
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 931
AsuHPI GGTGA 3 cut(s) 610, 706, 736
AvaII GGWCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 741
BauI CACGAG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 563
BbvI GCAGC 3 cut(s) 91, 109, 406
BccI CCATC 2 cut(s) 350, 499
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 858
BclI TGATCA 3 cut(s) 309, 600, 799
BcnI CCSGG 1 cut(s) 931
BcoDI GTCTC 2 cut(s) 112, 602
BfaI CTAG 3 cut(s) 84, 345, 438
BfmI CTRYAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 399
BglII AGATCT 1 cut(s) 258
BisI GCNGC 3 cut(s) 80, 123, 395
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 3 cut(s) 81, 124, 396
Bme1390I CCNGG 2 cut(s) 858, 931
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 858, 931
BoxI GACNNNNGTC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 931
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 838, 868
Bsc4I CCNNNNNNNGG 4 cut(s) 595, 747, 936, 937
Bse1I ACTGG 2 cut(s) 245, 925
Bse3DI GCAATG 2 cut(s) 213, 480
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 858
BseGI GGATG 2 cut(s) 361, 769
BseLI CCNNNNNNNGG 4 cut(s) 595, 747, 936, 937
BseMI GCAATG 2 cut(s) 213, 480
BseNI ACTGG 2 cut(s) 245, 925
BseXI GCAGC 3 cut(s) 91, 109, 406
BsgI GTGCAG 2 cut(s) 228, 858
BshFI GGCC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 185, 931
BslI CCNNNNNNNGG 4 cut(s) 595, 747, 936, 937
BsmAI GTCTC 2 cut(s) 112, 602
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 741
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 5 cut(s) 258, 309, 600, 799, 926
Bsp1720I GCTNAGC 1 cut(s) 374
BspANI GGCC 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 921
BsrDI GCAATG 2 cut(s) 213, 480
BsrI ACTGG 2 cut(s) 245, 925
BssMI GATC 5 cut(s) 258, 309, 600, 799, 926
BssSI CACGAG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 100, 463
Bst6I CTCTTC 4 cut(s) 315, 636, 913, 929
BstAPI GCANNNNNTGC 2 cut(s) 215, 261
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 361, 769
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 5 cut(s) 261, 312, 603, 802, 929
BstMAI GTCTC 2 cut(s) 112, 602
BstMBI GATC 5 cut(s) 258, 309, 600, 799, 926
BstMWI GCNNNNNNNGC 4 cut(s) 79, 175, 215, 261
BstNI CCWGG 1 cut(s) 858
BstPAI GACNNNNGTC 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 856, 929
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 91, 109, 406
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 2 cut(s) 258, 926
BstYI RGATCY 2 cut(s) 258, 926
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 361, 769
BtsIMutI CAGTG 2 cut(s) 96, 276
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 211
CaiI CAGNNNCTG 2 cut(s) 122, 580
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 62
CspCI CAANNNNNGTGG 4 cut(s) 85, 120, 273, 308
CviAII CATG 4 cut(s) 146, 352, 720, 948
CviJI RGCY 6 cut(s) 82, 122, 169, 666, 739, 812
CviKI_1 RGCY 6 cut(s) 82, 122, 169, 666, 739, 812
DdeI CTNAG 1 cut(s) 374
DpnI GATC 5 cut(s) 260, 311, 602, 801, 928
DpnII GATC 5 cut(s) 258, 309, 600, 799, 926
Eam1104I CTCTTC 4 cut(s) 315, 636, 913, 929
EarI CTCTTC 4 cut(s) 315, 636, 913, 929
Eco24I GRGCYC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 2 cut(s) 557, 611
EcoRI GAATTC 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 741
FaeI CATG 4 cut(s) 149, 355, 723, 951
FatI CATG 4 cut(s) 145, 351, 719, 947
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 3 cut(s) 309, 600, 799
Fnu4HI GCNGC 3 cut(s) 80, 123, 395
FokI GGATG 2 cut(s) 368, 756
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 3 cut(s) 80, 123, 395
FspBI CTAG 3 cut(s) 84, 345, 438
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 80, 123, 395
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 1 cut(s) 169
HapII CCGG 2 cut(s) 185, 931
HhaI GCGC 1 cut(s) 255
Hin1II CATG 4 cut(s) 149, 355, 723, 951
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 4 cut(s) 244, 296, 348, 780
HpaII CCGG 2 cut(s) 185, 931
HphI GGTGA 3 cut(s) 610, 706, 736
Hpy188III TCNNGA 5 cut(s) 37, 185, 422, 589, 773
HpyAV CCTTC 2 cut(s) 586, 837
HpyCH4III ACNGT 2 cut(s) 100, 463
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 175, 215, 261
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 4 cut(s) 149, 355, 723, 951
HspAI GCGC 1 cut(s) 253
Kpn2I TCCGGA 1 cut(s) 184
Ksp22I TGATCA 3 cut(s) 309, 600, 799
Kzo9I GATC 5 cut(s) 258, 309, 600, 799, 926
LmnI GCTCC 3 cut(s) 229, 359, 809
Lsp1109I GCAGC 3 cut(s) 91, 109, 406
MaeI CTAG 3 cut(s) 84, 345, 438
MaeIII GTNAC 1 cut(s) 334
MalI GATC 5 cut(s) 260, 311, 602, 801, 928
MboI GATC 5 cut(s) 258, 309, 600, 799, 926
MboII GAAGA 9 cut(s) 329, 332, 374, 447, 563, 623, 900, 936, 946
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 2 cut(s) 258, 926
MhlI GDGCHC 1 cut(s) 741
MluCI AATT 4 cut(s) 265, 408, 584, 821
MlyI GAGTC 3 cut(s) 253, 305, 357
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 8 cut(s) 36, 229, 316, 517, 639, 645, 840, 930
Mph1103I ATGCAT 1 cut(s) 721
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 1 cut(s) 675
MspI CCGG 2 cut(s) 185, 931
MspR9I CCNGG 2 cut(s) 858, 931
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 4 cut(s) 79, 175, 215, 261
NciI CCSGG 1 cut(s) 931
NdeI CATATG 1 cut(s) 229
NdeII GATC 5 cut(s) 258, 309, 600, 799, 926
NlaIII CATG 4 cut(s) 149, 355, 723, 951
NlaIV GGNNCC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 254
NsiI ATGCAT 1 cut(s) 721
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 1 cut(s) 780
PflMI CCANNNNNTGG 1 cut(s) 747
PfoI TCCNGGA 2 cut(s) 856, 929
PkrI GCNGC 3 cut(s) 81, 124, 396
PleI GAGTC 3 cut(s) 252, 304, 356
PpsI GAGTC 3 cut(s) 252, 304, 356
PshAI GACNNNNGTC 1 cut(s) 347
PshBI ATTAAT 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 396
PstNI CAGNNNCTG 2 cut(s) 122, 580
PsuI RGATCY 2 cut(s) 258, 926
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 3 cut(s) 80, 123, 395
Sau3AI GATC 5 cut(s) 258, 309, 600, 799, 926
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 3 cut(s) 253, 305, 357
ScrFI CCNGG 2 cut(s) 858, 931
SduI GDGCHC 1 cut(s) 741
SfcI CTRYAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 4 cut(s) 265, 408, 584, 821
SspI AATATT 2 cut(s) 765, 817
SspMI CTAG 3 cut(s) 84, 345, 438
StyD4I CCNGG 2 cut(s) 856, 929
TaaI ACNGT 2 cut(s) 100, 463
TasI AATT 4 cut(s) 265, 408, 584, 821
TfiI GAWTC 1 cut(s) 780
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 2 cut(s) 103, 276
TseI GCWGC 3 cut(s) 79, 122, 394
TspDTI ATGAA 3 cut(s) 576, 758, 814
TspRI CASTG 2 cut(s) 103, 276
Van91I CCANNNNNTGG 1 cut(s) 747
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 2 cut(s) 584, 821
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 3 cut(s) 84, 345, 438
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.