Rroxscaffold_7G00178470

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
18144688 .. 18145315
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178470.1

Sequence Viewer

Length: 588 bp
ATGGGCGATGTCGGAGTTGCTTTGAGAAACCCAAGAGTAATGAAGAAGGCCCAAGCTGAGGTGCGCGACAATCAATACGACGTCGACAATGTTCATCAGAAATTGGATTACTTGAGATCAATTGTGAAAGAAACCCTGCGGTTGCACCCTCCTACTCCCTTGCTTTCAAGAGAATCAAGGGAAAGATGCGAAATCGATGGATATGAATTACCTGCGAAGACGAAAGCAATCATCAATGTATGGGCACTGGCAAGAGATCCAGAACAATGGGGGGATGATGCTGATTCCTTTAAGCAAGAGGGGTTCCTCCATGACTCTATGACTGCCAAAATCGACTTCAGAGGGAATAACTTTGAGCTTTTACCCTTTGGGGCCGGTCGAAGAATATGTCCGGGCATGTCATTTGCCAATGCAGTGATTGAGCCAACTCTTTTCCAATTGCTCTACCGCTTTGATTGGGAACTGGCTGATGGGATAAAACCAGATGAACTAGACATGACTGAGAGTTGGGGAGCAACGTGCAGGAAAAGGGATGATTTGTACGTCATTGCCACCCCTCATTTCCTTGATTCAATGACCAAGTCCTAG

Protein Analysis

195

Amino Acids

22.35

Weight (kDa)

5.29

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 8 - 165 1.7e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 139, 448
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 168, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 56, 358
AluI AGCT 2 cut(s) 56, 358
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 48, 372
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 49, 372
AsuC2I CCSGG 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 224
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 191, 464
BcnI CCSGG 1 cut(s) 393
BfaI CTAG 2 cut(s) 491, 586
BfuAI ACCTGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 393
BmgT120I GGNCC 2 cut(s) 49, 372
BmiI GGNNCC 2 cut(s) 305, 373
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 176, 268
BpiI GAAGAC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 252, 468
Bse3DI GCAATG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 195
BseGI GGATG 2 cut(s) 280, 538
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 48, 492
BseNI ACTGG 2 cut(s) 252, 468
BseSI GKGCMC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 50, 374
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 379
BsiSI CCGG 2 cut(s) 375, 392
BslI CCNNNNNNNGG 1 cut(s) 58
BsnI GGCC 2 cut(s) 50, 374
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 116, 256
BspACI CCGC 2 cut(s) 139, 448
BspANI GGCC 2 cut(s) 50, 374
BspCNI CTCAG 2 cut(s) 49, 493
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 305, 373
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 2 cut(s) 252, 468
BssAI RCCGGY 1 cut(s) 374
BssMI GATC 2 cut(s) 116, 256
BssNI GRCGYC 1 cut(s) 81
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 57, 501
BstF5I GGATG 2 cut(s) 280, 538
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 119, 259
BstMBI GATC 2 cut(s) 116, 256
BstMCI CGRYCG 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 2 cut(s) 50, 374
BsuTUI ATCGAT 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 280, 538
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 245, 420
BveI ACCTGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 49, 372
ClaI ATCGAT 1 cut(s) 195
Csp6I GTAC 1 cut(s) 541
CviAII CATG 3 cut(s) 311, 397, 496
CviJI RGCY 6 cut(s) 50, 56, 358, 374, 424, 467
CviKI_1 RGCY 6 cut(s) 50, 56, 358, 374, 424, 467
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 57, 501
DpnI GATC 2 cut(s) 118, 258
DpnII GATC 2 cut(s) 116, 256
Eco57I CTGAAG 1 cut(s) 322
FaeI CATG 3 cut(s) 314, 400, 499
FaiI YATR 7 cut(s) 204, 241, 312, 320, 388, 398, 497
FatI CATG 3 cut(s) 310, 396, 495
FblI GTMKAC 1 cut(s) 84
FokI GGATG 2 cut(s) 287, 545
FspBI CTAG 2 cut(s) 491, 586
GlaI GCGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 50, 374
HapII CCGG 2 cut(s) 375, 392
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 314, 400, 499
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 4 cut(s) 173, 284, 314, 569
HpaII CCGG 2 cut(s) 375, 392
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 14, 99, 341
Hpy188III TCNNGA 2 cut(s) 168, 260
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 3 cut(s) 81, 518, 543
HpyCH4V TGCA 3 cut(s) 145, 413, 522
HpyF3I CTNAG 2 cut(s) 57, 501
HpySE526I ACGT 3 cut(s) 81, 518, 543
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 314, 400, 499
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 116, 256
LmnI GCTCC 1 cut(s) 512
LpnPI CCDG 9 cut(s) 149, 225, 233, 273, 388, 405, 449, 495, 508
LweI GCATC 2 cut(s) 176, 268
MaeI CTAG 2 cut(s) 491, 586
MaeII ACGT 3 cut(s) 81, 518, 543
MalI GATC 2 cut(s) 118, 258
MboI GATC 2 cut(s) 116, 256
MboII GAAGA 3 cut(s) 55, 229, 393
MfeI CAATTG 2 cut(s) 120, 437
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 4 cut(s) 101, 120, 206, 437
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 6 cut(s) 52, 159, 292, 317, 335, 567
MseI TTAA 1 cut(s) 291
MspI CCGG 2 cut(s) 375, 392
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 2 cut(s) 120, 437
MvnI CGCG 1 cut(s) 66
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 116, 256
NlaIII CATG 3 cut(s) 314, 400, 499
NlaIV GGNNCC 2 cut(s) 305, 373
NspI RCATGY 1 cut(s) 400
PfeI GAWTC 3 cut(s) 173, 284, 569
PflFI GACNNNGTC 1 cut(s) 580
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 305, 373
PspPI GGNCC 2 cut(s) 49, 372
PsuI RGATCY 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 580
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 2 cut(s) 116, 256
Sau96I GGNCC 2 cut(s) 49, 372
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 247
SetI ASST 7 cut(s) 58, 63, 84, 214, 360, 521, 546
SfaNI GCATC 2 cut(s) 176, 268
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 4 cut(s) 101, 120, 206, 437
SsiI CCGC 2 cut(s) 139, 448
SspMI CTAG 2 cut(s) 491, 586
StyD4I CCNGG 1 cut(s) 391
TaiI ACGT 3 cut(s) 84, 521, 546
TaqI TCGA 4 cut(s) 84, 195, 333, 379
TasI AATT 4 cut(s) 101, 120, 206, 437
TfiI GAWTC 3 cut(s) 173, 284, 569
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 252, 420
TspDTI ATGAA 4 cut(s) 56, 83, 219, 501
TspRI CASTG 2 cut(s) 252, 420
Tth111I GACNNNGTC 1 cut(s) 580
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 491, 586
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.