Rmu_sc0005044.1_g000025

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005044.1
OG0000132
Physical Location & Seq
Reverse (-)
114444 .. 115160
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005044.1_g000025.1.cds

Sequence Viewer

Length: 717 bp
atgcacatcaaagtgggacaagtatcagccgtagtgatttcatctccggaactagctgaagaggtgttgaggacacatgaaactgccttctcgcaacgccccactgtttttgctattgaggttttgtcttatgatctttcaagtatcctcttttgtcctaataatgattactggaggcaaatgcgcaagatttgcgtgtcggagctcttaagtacagagcgtgtgcattcttttgcatcaataagagaagaagaggcatggaatcttgtcgaaacagtttattcttcagcatcacagccacagctagtggtcaacctcagcgagatgattttctccatgcaaaacggcatcactgcccgggcagccttggggaagaagtgcaaacatcaacaagaatttacctcattgatcgatgaaatcaaccagcttgcaggaggctttgcagtgccagatttgttcccttctctcaaattccttcgtcatgtcacacgtttcaagcctgcccttcagaaaatacacggaaaaatggacaggatgcttgatgaaatcatcaatgatcataaagtgaaaagagaatcatcagctggtgatgatcccctgcaagaagatatagttgatgtgcttttacaacttcaggagtgtagtgatcagatccagcttgatgtcaaaaccaagcatatcaaagctatcacaatggtaagaaatagttgtccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

238

Amino Acids

26.98

Weight (kDa)

5.91

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 46
AclWI GGATC 2 cut(s) 587, 646
AcsI RAATTY 2 cut(s) 395, 470
AcuI CTGAAG 4 cut(s) 78, 270, 491, 617
AfaI GTAC 1 cut(s) 214
AflII CTTAAG 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 2 cut(s) 141, 496
AluBI AGCT 7 cut(s) 56, 205, 304, 427, 584, 658, 686
AluI AGCT 7 cut(s) 56, 205, 304, 427, 584, 658, 686
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 2 cut(s) 587, 646
Ama87I CYCGRG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 395, 470
AspLEI GCGC 1 cut(s) 186
AsuC2I CCSGG 2 cut(s) 358, 359
AsuHPI GGTGA 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 357
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 374
BceAI ACGGC 2 cut(s) 14, 361
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 2 cut(s) 556, 646
BcnI CCSGG 2 cut(s) 358, 359
BfaI CTAG 2 cut(s) 53, 305
BfrI CTTAAG 1 cut(s) 208
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 358, 359
BmeT110I CYCGRG 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 358, 359
BmsI GCATC 4 cut(s) 245, 299, 357, 525
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 317
BpuMI CCSGG 2 cut(s) 358, 359
Bsa29I ATCGAT 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 357, 366
BsaWI WCCGGW 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 46
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 357, 366
BseGI GGATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 374
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 2 cut(s) 47, 358
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 6 cut(s) 133, 408, 556, 592, 646, 651
BspCNI CTCAG 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 46
BspPI GGATC 2 cut(s) 587, 646
BspTI CTTAAG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 357, 366
BssMI GATC 6 cut(s) 133, 408, 556, 592, 646, 651
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 106, 277
Bst6I CTCTTC 2 cut(s) 54, 246
BstAFI CTTAAG 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 429, 501
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 6 cut(s) 136, 411, 559, 595, 649, 654
BstMBI GATC 6 cut(s) 133, 408, 556, 592, 646, 651
BstMWI GCNNNNNNNGC 2 cut(s) 192, 362
BstSCI CCNGG 2 cut(s) 356, 357
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
Bsu15I ATCGAT 1 cut(s) 411
BsuI GTATCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 411
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 2 cut(s) 351, 450
BtsIMutI CAGTG 3 cut(s) 102, 351, 450
Cac8I GCNNGC 2 cut(s) 429, 501
CfoI GCGC 1 cut(s) 186
Cfr9I CCCGGG 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 213
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 5 cut(s) 77, 258, 337, 482, 714
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 317
DpnI GATC 6 cut(s) 135, 410, 558, 594, 648, 653
DpnII GATC 6 cut(s) 133, 408, 556, 592, 646, 651
Eam1104I CTCTTC 2 cut(s) 54, 246
EarI CTCTTC 2 cut(s) 54, 246
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 4 cut(s) 78, 270, 491, 617
Eco88I CYCGRG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 5 cut(s) 80, 261, 340, 485, 717
FaiI YATR 9 cut(s) 78, 132, 259, 338, 483, 561, 611, 678, 715
FaqI GGGAC 1 cut(s) 30
FatI CATG 5 cut(s) 76, 257, 336, 481, 713
FbaI TGATCA 2 cut(s) 556, 646
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 547
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 53, 305
FspI TGCGCA 1 cut(s) 185
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 2 cut(s) 47, 358
HhaI GCGC 1 cut(s) 186
Hin1II CATG 5 cut(s) 80, 261, 340, 485, 717
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 262, 575
HpaII CCGG 2 cut(s) 47, 358
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 202, 510, 651
Hpy188III TCNNGA 2 cut(s) 47, 635
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 4 cut(s) 97, 471, 485, 515
HpyCH4III ACNGT 2 cut(s) 106, 277
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 8 cut(s) 4, 226, 236, 340, 381, 431, 443, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 362
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 5 cut(s) 80, 261, 340, 485, 717
HspAI GCGC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 2 cut(s) 556, 646
Kzo9I GATC 6 cut(s) 133, 408, 556, 592, 646, 651
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 4 cut(s) 245, 299, 357, 525
MaeI CTAG 2 cut(s) 53, 305
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 1 cut(s) 484
MalI GATC 6 cut(s) 135, 410, 558, 594, 648, 653
MboI GATC 6 cut(s) 133, 408, 556, 592, 646, 651
MboII GAAGA 6 cut(s) 71, 260, 263, 276, 385, 617
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 395, 470
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 9 cut(s) 55, 63, 112, 158, 168, 247, 326, 412, 428
MroI TCCGGA 1 cut(s) 46
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 584
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 2 cut(s) 47, 358
MspR9I CCNGG 2 cut(s) 358, 359
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 192, 362
NciI CCSGG 2 cut(s) 358, 359
NdeII GATC 6 cut(s) 133, 408, 556, 592, 646, 651
NlaIII CATG 5 cut(s) 80, 261, 340, 485, 717
NmuCI GTSAC 1 cut(s) 484
NsbI TGCGCA 1 cut(s) 185
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 262, 575
PkrI GCNGC 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 651
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 6 cut(s) 133, 408, 556, 592, 646, 651
ScrFI CCNGG 2 cut(s) 358, 359
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 4 cut(s) 245, 299, 357, 525
SmaI CCCGGG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SrfI GCCCGGGC 1 cut(s) 359
Sse9I AATT 2 cut(s) 395, 470
SspMI CTAG 2 cut(s) 53, 305
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 356, 357
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 106, 277
TaiI ACGT 1 cut(s) 493
TaqI TCGA 2 cut(s) 270, 411
TasI AATT 2 cut(s) 395, 470
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 2 cut(s) 262, 575
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 3 cut(s) 109, 358, 450
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 4 cut(s) 30, 93, 429, 558
TspGWI ACGGA 1 cut(s) 534
TspMI CCCGGG 1 cut(s) 357
TspRI CASTG 3 cut(s) 109, 358, 450
Vha464I CTTAAG 1 cut(s) 208
XapI RAATTY 2 cut(s) 395, 470
XmaI CCCGGG 1 cut(s) 357
XspI CTAG 2 cut(s) 53, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.