pycom03g13950

Cytochrome p450

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
15111001 .. 15111686
686 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13950.2

Sequence Viewer

Length: 417 bp
ATGACATATGGCATCACTGCCAGAGTGGTAGTTGGCAACAAACGCAAAGACATGGTCCAAGAAGAACTAATAACAGCTGATAGGGAAGGTGCAAATGCAACGGGTGGCTTCGAGGTGGATGATATATTCCCTTCCATCAAAATACTTCATGATATTTTCACTGCAGGGATTGAAACTTCATCTTCAACTGTGAAATGGGAGATGTCAGAAATGCTGAAAACACCAAGAGTGATGACCAAGGCACAAGCAGAGGTGAGACAAGTCTTGTCTACAAAAGGCGTCGTGGTCGAGGAAACAGGCCTTGAGGAATCGAAACTTTGCCATTACACCCTCCCATTCATTTGTTGCTTCCGAAAGAATGCAGCGGAAGTTGTGAGGTTGAAAAATCATTGGTCTGAAGCAAAGAGAGATTCTTGA
Functional Annotation

Protein Analysis

139

Amino Acids

15.48

Weight (kDa)

6.31

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AciI CCGC 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 279
AgsI TTSAA 3 cut(s) 173, 186, 382
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 250
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 250
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 374
BshFI GGCC 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 300
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 300
BspHI TCATGA 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 237
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 279
BstF5I GGATG 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 2 cut(s) 15, 159
BtsIMutI CAGTG 2 cut(s) 15, 159
CciI TCATGA 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 268
CviAII CATG 2 cut(s) 52, 149
CviJI RGCY 3 cut(s) 77, 108, 300
CviKI_1 RGCY 3 cut(s) 77, 108, 300
Eco130I CCWWGG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 55, 152
FaiI YATR 5 cut(s) 7, 9, 53, 125, 150
FatI CATG 2 cut(s) 51, 148
FauNDI CATATG 1 cut(s) 7
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 1 cut(s) 300
HgaI GACGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 55, 152
HinfI GANTC 2 cut(s) 308, 410
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 3 cut(s) 208, 353, 397
Hpy188III TCNNGA 2 cut(s) 149, 414
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 80, 141
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 4 cut(s) 92, 98, 164, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 55, 152
LpnPI CCDG 3 cut(s) 34, 150, 282
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 74, 174
MnlI CCTC 6 cut(s) 106, 244, 283, 298, 341, 369
MspA1I CMGCKG 2 cut(s) 77, 365
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeI CATATG 1 cut(s) 7
NlaIII CATG 2 cut(s) 55, 152
PagI TCATGA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 300
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 2 cut(s) 308, 410
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 77
SatI GCNGC 1 cut(s) 363
Sau96I GGNCC 1 cut(s) 55
SetI ASST 5 cut(s) 79, 91, 117, 255, 380
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 1 cut(s) 365
StuI AGGCCT 1 cut(s) 300
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 3 cut(s) 111, 288, 311
TfiI GAWTC 2 cut(s) 308, 410
TscAI CASTG 2 cut(s) 22, 166
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 3 cut(s) 137, 168, 328
TspRI CASTG 2 cut(s) 22, 166
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.