Rmu_sc0027639.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027639.1
OG0000132
Physical Location & Seq
Reverse (-)
596 .. 1123
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027639.1_g000001.1.cds

Sequence Viewer

Length: 528 bp
atgaaacgggcacagggtgaggtgagagaagtgtataaccaaaaacagcaggcaaacgaaacaggcattaaagagatgaaatatttaaagttggttattcaagagacactgaggatacaccctgttgttccctgttacttccacgagaatgtggagagaggtgtgagatatgaaatacctgtcaaaacaagggtaattgtgaatgcttgggcaatcggaagagatcccaattactggactgagcccgagaccttttatccagacagattccttgatagctcttttgactaccaaggaacaaactttgaggatatcccatttggtgctggaaggagaattttccctggcatattatacggtctggcaaatgttgagctcccactagcattgttgttatatcattttgattggaaactccctaatggaatgaagaatgacgacttggacatgactgaggactttggcattgcagtccgcagaaaagaagatcttcatttgattgccactccatatcattcctctgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

175

Amino Acids

20.44

Weight (kDa)

5.75

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 1 cut(s) 475
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 1 cut(s) 343
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 2 cut(s) 279, 376
AluI AGCT 2 cut(s) 279, 376
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 2 cut(s) 98, 242
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 245
ApoI RAATTY 1 cut(s) 336
Asp700I GAANNNNTTC 1 cut(s) 489
AsuHPI GGTGA 2 cut(s) 29, 34
AvaI CYCGRG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 246, 378
BauI CACGAG 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 378
BciT130I CCWGG 1 cut(s) 345
BciVI GTATCC 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 98, 242
BfaI CTAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 108
BglII AGATCT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 292, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 292, 343
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 101, 231, 444
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 98, 242
BsmI GAATGC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 13, 246, 378
Bsp143I GATC 2 cut(s) 223, 487
BspACI CCGC 1 cut(s) 475
BspCNI CTCAG 3 cut(s) 102, 232, 445
BspPI GGATC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 292, 343
BssMI GATC 2 cut(s) 223, 487
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 110, 240, 453
BstKTI GATC 2 cut(s) 226, 490
BstMAI GTCTC 2 cut(s) 98, 242
BstMBI GATC 2 cut(s) 223, 487
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 223, 487
BstYI RGATCY 2 cut(s) 223, 487
BsuI GTATCC 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 51
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 1 cut(s) 448
CviJI RGCY 3 cut(s) 244, 279, 376
CviKI_1 RGCY 3 cut(s) 244, 279, 376
DdeI CTNAG 3 cut(s) 110, 240, 453
DpnI GATC 2 cut(s) 225, 489
DpnII GATC 2 cut(s) 223, 487
DraI TTTAAA 1 cut(s) 87
DraIII CACNNNGTG 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 292
Eco24I GRGCYC 2 cut(s) 246, 378
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 343
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 292
EcoT38I GRGCYC 2 cut(s) 246, 378
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 1 cut(s) 451
FaiI YATR 7 cut(s) 36, 171, 350, 355, 397, 449, 511
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FatI CATG 1 cut(s) 447
FriOI GRGCYC 2 cut(s) 246, 378
FspBI CTAG 1 cut(s) 383
Hin1II CATG 1 cut(s) 451
HinfI GANTC 1 cut(s) 267
HphI GGTGA 2 cut(s) 29, 34
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 2 cut(s) 101, 260
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 1 cut(s) 470
HpyF3I CTNAG 3 cut(s) 110, 240, 453
Hsp92II CATG 1 cut(s) 451
Kzo9I GATC 2 cut(s) 223, 487
LmnI GCTCC 1 cut(s) 381
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 225, 489
MboI GATC 2 cut(s) 223, 487
MboII GAAGA 4 cut(s) 231, 442, 482, 497
MflI RGATCY 2 cut(s) 223, 487
MhlI GDGCHC 3 cut(s) 13, 246, 378
MluCI AATT 3 cut(s) 195, 229, 336
MnlI CCTC 5 cut(s) 13, 105, 152, 301, 448
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 2 cut(s) 69, 86
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 345
NdeII GATC 2 cut(s) 223, 487
NlaIII CATG 1 cut(s) 451
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PsuI RGATCY 2 cut(s) 223, 487
RseI CAYNNNNRTG 1 cut(s) 147
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 2 cut(s) 69, 86
Sau3AI GATC 2 cut(s) 223, 487
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 3 cut(s) 13, 246, 378
SetI ASST 6 cut(s) 24, 163, 181, 254, 281, 378
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 3 cut(s) 195, 229, 336
SsiI CCGC 1 cut(s) 475
SspI AATATT 1 cut(s) 83
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 359
TasI AATT 3 cut(s) 195, 229, 336
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 69, 86
Tru9I TTAA 2 cut(s) 69, 86
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 5 cut(s) 17, 92, 186, 443, 482
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.