Rmu_sc0019317.1_g000001

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019317.1
OG0000132
Physical Location & Seq
Forward (+)
1 .. 412
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019317.1_g000001.1.cds

Sequence Viewer

Length: 412 bp
ccctcctcttgccttaatcgcaagacaagccactcagacatgtaaaattagtggatatgatataccatctgaaaccaaactactggtcaatgcttgggcaattgagagagaccgaaggcattggggcgctagtgctgactgctttgagcctgaaaggttccaaggttcttccattgattttaaagggaccaacttcgaatttattccatttggggctggtaagagaatgtgtccaggcatatcatttggaactgcatcagttgagattgcacttgctcaactgttgtaccacttcaactggaaactccccaatgggacaaaattagaagagcttgtcatgactgaatcaatgggaatgagcgcaaggaagaagaatgacttgaaagttattgccattccttacattctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

136

Amino Acids

15.18

Weight (kDa)

8.62

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 2 cut(s) 296, 383
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp700I GAANNNNTTC 1 cut(s) 202
AspLEI GCGC 2 cut(s) 129, 363
AspS9I GGNCC 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 187
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 159, 188
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 88, 303
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 88, 303
BslFI GGGAC 2 cut(s) 200, 329
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 200, 329
Bso31I GGTCTC 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 159, 188
BspQI GCTCTTC 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 103
BsrI ACTGG 2 cut(s) 88, 303
BssECI CCNNGG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 363
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 18, 27
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 83
CciI TCATGA 1 cut(s) 337
CfoI GCGC 2 cut(s) 129, 363
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 40, 338
CviJI RGCY 4 cut(s) 30, 149, 216, 332
CviKI_1 RGCY 4 cut(s) 30, 149, 216, 332
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 34
DraI TTTAAA 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 43, 341
FaiI YATR 5 cut(s) 41, 58, 63, 240, 339
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 2 cut(s) 200, 329
FatI CATG 2 cut(s) 39, 337
FspBI CTAG 1 cut(s) 130
GlaI GCGC 2 cut(s) 128, 362
HaeII RGCGCY 1 cut(s) 130
HhaI GCGC 2 cut(s) 129, 363
Hin1II CATG 2 cut(s) 43, 341
Hin6I GCGC 2 cut(s) 127, 361
HinP1I GCGC 2 cut(s) 127, 361
HinfI GANTC 1 cut(s) 345
Hpy188I TCNGA 2 cut(s) 37, 71
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 255, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 27
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 2 cut(s) 43, 341
HspAI GCGC 2 cut(s) 127, 361
LguI GCTCTTC 1 cut(s) 322
LpnPI CCDG 6 cut(s) 69, 163, 202, 220, 247, 284
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 130
MboII GAAGA 4 cut(s) 160, 339, 380, 383
MfeI CAATTG 1 cut(s) 100
MluCI AATT 4 cut(s) 46, 100, 198, 321
MnlI CCTC 2 cut(s) 13, 16
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 2 cut(s) 15, 181
MspR9I CCNGG 1 cut(s) 235
MunI CAATTG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 18, 27
NlaIII CATG 2 cut(s) 43, 341
NlaIV GGNNCC 2 cut(s) 159, 188
NspI RCATGY 1 cut(s) 43
NspV TTCGAA 1 cut(s) 196
PagI TCATGA 1 cut(s) 337
PciI ACATGT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 159, 188
PspPI GGNCC 1 cut(s) 187
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 15, 181
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 235
SetI ASST 3 cut(s) 159, 167, 334
SfaNI GCATC 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 187
Sse9I AATT 4 cut(s) 46, 100, 198, 321
SspMI CTAG 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 196
TaqII GACCGA 1 cut(s) 127
TasI AATT 4 cut(s) 46, 100, 198, 321
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 2 cut(s) 15, 181
Tru9I TTAA 2 cut(s) 15, 181
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.