Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000132

Physical Location & Seq

Genomic Coordinates Reverse (-)

33611570 .. 33613041

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1153300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATGAAATTGATCAAAGCTTATCTGGATCAAGTTATGTTTCTAATTGACGAAACGCCCTATTTTCCTTTTTTCACTTCTCTCCTTGTCTGCATCCTGGTGATTTTTTGGAAGCGATCCAGAGCCGGAGGCCTAAAGTCACCCCCAGGGCCATGGAAGCTGCCGTTTATTGGAAACTTACATCAAATGTCTTTCAGATCCGTGAGAGAAGAAGAGGTACGGAATCTTGCCGAGTCCATTGGCCCAATGTCTCACGAGGGACTTGCCATCAATTTTAGGGACAGGTGCTGCAGCTTCACAAGTGGCGTAGTGTCAAAGGCAGCATTTGGGAAAAAATGCAAAGACCAAAAGGAGTTCCTTTCGCTACTAGACGAAATACTCAAACTTGATAGTGGGTTTGATATTCCTGATTTGTTTCCTGCTCTCAAAGACATAAAAAGCAAGCTCAATACGATTCTCGAACGTATCATCAACGATCATAAAATCAAAAGCAATGACAAAGCAGTGGAGGAGGAAAATTTTGTTGACGTACTTCTAAAACTTAAAGAGTCCAACTTGGTGGAGTTCAATTTCATAACCAATCATATCACAGATAGGATTATGGACATGTTCTCTGCAGGAAGCGAGACTTCAGCTACTACCTTAGAATGGGCAATGTCAGAGTTGATGAGAGAAACCCAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

230

Amino Acids

26.2

Weight (kDa)

5.68

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	61 - 225	9.9e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica	MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica	Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis	pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis	RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata	RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora	Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa	Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha	Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana	Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	36, 111, 192
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	2 cut(s)	219, 531
AfiI	CCNNNNNNNGG	2 cut(s)	170, 648
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	96, 145
AluBI	AGCT	5 cut(s)	20, 160, 294, 445, 635
AluI	AGCT	5 cut(s)	20, 160, 294, 445, 635
Alw26I	GTCTC	2 cut(s)	255, 620
AlwI	GGATC	3 cut(s)	36, 111, 192
AlwNI	CAGNNNCTG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	130, 149, 241
ApeKI	GCWGC	4 cut(s)	160, 288, 291, 320
ApoI	RAATTY	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	149, 242
AsuHPI	GGTGA	2 cut(s)	112, 132
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BauI	CACGAG	1 cut(s)	254
BbvI	GCAGC	4 cut(s)	147, 275, 303, 332
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	2 cut(s)	98, 147
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	255, 620
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	2 cut(s)	289, 615
BisI	GCNGC	4 cut(s)	161, 289, 292, 321
BlsI	GCNGC	4 cut(s)	162, 290, 293, 322
Bme1390I	CCNGG	2 cut(s)	98, 147
BmgT120I	GGNCC	2 cut(s)	149, 242
BmrFI	CCNGG	2 cut(s)	98, 147
BmsI	GCATC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	145, 146, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 648
Bse3DI	GCAATG	2 cut(s)	499, 660
BseBI	CCWGG	2 cut(s)	98, 147
BseDI	CCNNGG	3 cut(s)	145, 146, 152
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	170, 648
BseMI	GCAATG	2 cut(s)	499, 660
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	4 cut(s)	147, 275, 303, 332
BshFI	GGCC	3 cut(s)	132, 151, 243
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	273, 293
BslI	CCNNNNNNNGG	2 cut(s)	170, 648
BsmAI	GTCTC	2 cut(s)	255, 620
BsmFI	GGGAC	2 cut(s)	273, 293
BsnI	GGCC	3 cut(s)	132, 151, 243
Bsp143I	GATC	5 cut(s)	12, 28, 116, 197, 475
Bsp19I	CCATGG	1 cut(s)	152
BspANI	GGCC	3 cut(s)	132, 151, 243
BspHI	TCATGA	1 cut(s)	686
BspMAI	CTGCAG	2 cut(s)	293, 619
BspPI	GGATC	3 cut(s)	36, 111, 192
BsrDI	GCAATG	2 cut(s)	499, 660
BssECI	CCNNGG	3 cut(s)	145, 146, 152
BssMI	GATC	5 cut(s)	12, 28, 116, 197, 475
BssSI	CACGAG	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	98, 147
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	643
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	5 cut(s)	15, 31, 119, 200, 478
BstMAI	GTCTC	2 cut(s)	255, 620
BstMBI	GATC	5 cut(s)	12, 28, 116, 197, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	2 cut(s)	98, 147
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	96, 145
BstSFI	CTRYAG	2 cut(s)	289, 615
BstV1I	GCAGC	4 cut(s)	147, 275, 303, 332
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	2 cut(s)	153, 559
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	132, 151, 243
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	288
CciI	TCATGA	1 cut(s)	686
Cfr13I	GGNCC	2 cut(s)	149, 242
Csp6I	GTAC	2 cut(s)	218, 530
CviAII	CATG	3 cut(s)	153, 607, 687
CviJI	RGCY	9 cut(s)	20, 125, 132, 151, 160, 243, 294, 445, 635
CviKI_1	RGCY	9 cut(s)	20, 125, 132, 151, 160, 243, 294, 445, 635
CviQI	GTAC	2 cut(s)	218, 530
DdeI	CTNAG	1 cut(s)	643
DpnI	GATC	5 cut(s)	14, 30, 118, 199, 477
DpnII	GATC	5 cut(s)	12, 28, 116, 197, 475
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	96, 145
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	156, 610, 690
FaiI	YATR	9 cut(s)	38, 154, 434, 480, 575, 585, 602, 608, 688
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FaqI	GGGAC	2 cut(s)	273, 293
FatI	CATG	3 cut(s)	152, 606, 686
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	161, 289, 292, 321
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	161, 289, 292, 321
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	4 cut(s)	161, 289, 292, 321
HaeIII	GGCC	3 cut(s)	132, 151, 243
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	3 cut(s)	156, 610, 690
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	5 cut(s)	223, 233, 454, 548, 683
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	112, 132
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	2 cut(s)	197, 661
Hpy188III	TCNNGA	6 cut(s)	26, 120, 254, 407, 458, 687
Hpy8I	GTNNAC	1 cut(s)	526
HpyCH4IV	ACGT	2 cut(s)	463, 528
HpyCH4V	TGCA	4 cut(s)	93, 291, 339, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	643
HpySE526I	ACGT	2 cut(s)	463, 528
Hsp92II	CATG	3 cut(s)	156, 610, 690
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	12, 28, 116, 197, 475
Lsp1109I	GCAGC	4 cut(s)	147, 275, 303, 332
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	463, 528
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	5 cut(s)	14, 30, 118, 199, 477
MboI	GATC	5 cut(s)	12, 28, 116, 197, 475
MboII	GAAGA	2 cut(s)	221, 224
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	5 cut(s)	8, 45, 271, 517, 568
MlyI	GAGTC	2 cut(s)	242, 557
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	5 cut(s)	122, 208, 250, 502, 505
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	98, 147
MvaI	CCWGG	2 cut(s)	98, 147
MwoI	GCNNNNNNNGC	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	5 cut(s)	12, 28, 116, 197, 475
NlaIII	CATG	3 cut(s)	156, 610, 690
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	610
PagI	TCATGA	1 cut(s)	686
PasI	CCCWGGG	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	132
PciI	ACATGT	1 cut(s)	606
PfeI	GAWTC	3 cut(s)	223, 454, 683
PkrI	GCNGC	4 cut(s)	162, 290, 293, 322
PleI	GAGTC	2 cut(s)	241, 556
PpsI	GAGTC	2 cut(s)	241, 556
PscI	ACATGT	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	96, 145
PspGI	CCWGG	2 cut(s)	96, 145
PspPI	GGNCC	2 cut(s)	149, 242
PstI	CTGCAG	2 cut(s)	293, 619
PstNI	CAGNNNCTG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	2 cut(s)	219, 531
RsaNI	GTAC	2 cut(s)	218, 530
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	4 cut(s)	161, 289, 292, 321
Sau3AI	GATC	5 cut(s)	12, 28, 116, 197, 475
Sau96I	GGNCC	2 cut(s)	149, 242
SchI	GAGTC	2 cut(s)	242, 557
ScrFI	CCNGG	2 cut(s)	98, 147
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	2 cut(s)	289, 615
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	5 cut(s)	8, 45, 271, 517, 568
SseBI	AGGCCT	1 cut(s)	132
SspMI	CTAG	1 cut(s)	368
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	96, 145
StyI	CCWWGG	1 cut(s)	152
TaiI	ACGT	2 cut(s)	466, 531
TaqI	TCGA	1 cut(s)	459
TasI	AATT	5 cut(s)	8, 45, 271, 517, 568
TfiI	GAWTC	3 cut(s)	223, 454, 683
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	4 cut(s)	160, 288, 291, 320
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	20, 562
TspGWI	ACGGA	2 cut(s)	190, 235
TspRI	CASTG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	610
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.