Rmu_co8271167.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8271167.1
OG0000132
Physical Location & Seq
Forward (+)
120 .. 674
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8271167.1_g000001.1.cds

Sequence Viewer

Length: 555 bp
atgaaaagggcacaggatgaggtgagggaagtgttcaatagaaaagggcaggtaagtgaaacaagcatcaaagagatgaaatatttaaactcaattattaaggagacactcagattgcacccatctgcccctctgttaattccaagagaatgcggagagaggtgtgagattggtggatatgaaatacctgtcaaaacaaaggtaattgtcaatggatgggcaattggtagagatccaaaatactggactgagcctgagagctttcatccagagagattccttgatagctcaattgatttcaggggaacaaactttgagtatatcccatttggtgctggaagaagaatgtgtcccggcataacatatggtctggccaatgtggagctcccacttgcaatgttattataccattttgattggaaactccaaaatggaatgaaacatgaagacctggacatgactgaggcctttggcattacagtccgtagaaaagaagatctgcgccttatacccatcccatatcatcctccaccaactgaacaaacccaagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

184

Amino Acids

21.34

Weight (kDa)

6.53

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 372
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 3 cut(s) 261, 288, 385
AluI AGCT 3 cut(s) 261, 288, 385
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 227
AoxI GGCC 2 cut(s) 372, 465
AspLEI GCGC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 387
BccI CCATC 3 cut(s) 130, 210, 521
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 40
BglII AGATCT 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 354, 452
BmrFI CCNGG 2 cut(s) 354, 452
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 452
BseGI GGATG 5 cut(s) 22, 221, 265, 513, 523
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 4 cut(s) 124, 240, 246, 453
BseNI ACTGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 13
BshFI GGCC 2 cut(s) 374, 467
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 2 cut(s) 374, 467
Bsp1286I GDGCHC 2 cut(s) 13, 387
Bsp143I GATC 2 cut(s) 232, 496
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 374, 467
BspCNI CTCAG 4 cut(s) 123, 241, 247, 454
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 248
BssMI GATC 2 cut(s) 232, 496
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 481
BstDEI CTNAG 4 cut(s) 110, 249, 255, 462
BstF5I GGATG 5 cut(s) 22, 221, 265, 513, 523
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 2 cut(s) 235, 499
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 232, 496
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 352, 450
BstSLI GKGCMC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 232, 496
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 2 cut(s) 232, 496
BsuRI GGCC 2 cut(s) 374, 467
BtsCI GGATG 5 cut(s) 22, 221, 265, 513, 523
BveI ACCTGC 1 cut(s) 40
CfoI GCGC 1 cut(s) 504
CviAII CATG 2 cut(s) 443, 457
CviJI RGCY 6 cut(s) 253, 261, 288, 374, 385, 467
CviKI_1 RGCY 6 cut(s) 253, 261, 288, 374, 385, 467
DdeI CTNAG 4 cut(s) 110, 249, 255, 462
DpnI GATC 2 cut(s) 234, 498
DpnII GATC 2 cut(s) 232, 496
DraI TTTAAA 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 385
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 2 cut(s) 446, 460
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 442, 456
FauNDI CATATG 1 cut(s) 364
FokI GGATG 5 cut(s) 29, 228, 252, 500, 510
FriOI GRGCYC 1 cut(s) 387
GlaI GCGC 1 cut(s) 503
HaeIII GGCC 2 cut(s) 374, 467
HapII CCGG 1 cut(s) 354
HhaI GCGC 1 cut(s) 504
Hin1II CATG 2 cut(s) 446, 460
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HinfI GANTC 1 cut(s) 276
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4V TGCA 2 cut(s) 118, 395
HpyF3I CTNAG 4 cut(s) 110, 249, 255, 462
Hsp92II CATG 2 cut(s) 446, 460
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 232, 496
LmnI GCTCC 2 cut(s) 382, 390
LweI GCATC 1 cut(s) 75
MalI GATC 2 cut(s) 234, 498
MboI GATC 2 cut(s) 232, 496
MboII GAAGA 4 cut(s) 351, 354, 458, 506
MfeI CAATTG 2 cut(s) 222, 291
MflI RGATCY 2 cut(s) 232, 496
MhlI GDGCHC 2 cut(s) 13, 387
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 5 cut(s) 93, 138, 204, 222, 291
MluNI TGGCCA 1 cut(s) 374
MnlI CCTC 6 cut(s) 13, 18, 141, 153, 457, 537
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 3 cut(s) 86, 99, 137
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 2 cut(s) 354, 452
MunI CAATTG 2 cut(s) 222, 291
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 452
NciI CCSGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 232, 496
NlaIII CATG 2 cut(s) 446, 460
PceI AGGCCT 1 cut(s) 467
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PsuI RGATCY 2 cut(s) 232, 496
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 86, 99, 137
Sau3AI GATC 2 cut(s) 232, 496
ScrFI CCNGG 2 cut(s) 354, 452
SduI GDGCHC 2 cut(s) 13, 387
SetI ASST 9 cut(s) 24, 54, 164, 190, 204, 263, 290, 387, 453
SfaNI GCATC 1 cut(s) 75
Sse9I AATT 5 cut(s) 93, 138, 204, 222, 291
SseBI AGGCCT 1 cut(s) 467
SsiI CCGC 1 cut(s) 153
SspI AATATT 1 cut(s) 83
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 352, 450
TaaI ACNGT 1 cut(s) 481
TasI AATT 5 cut(s) 93, 138, 204, 222, 291
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 3 cut(s) 86, 99, 137
Tru9I TTAA 3 cut(s) 86, 99, 137
TspDTI ATGAA 6 cut(s) 17, 92, 195, 254, 452, 459
TspGWI ACGGA 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.