RLG00000025972

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000132
Physical Location & Seq
Forward (+)
49566397 .. 49567298
902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025972

Sequence Viewer

Length: 726 bp
ATGGACATGATTCTTGATGAAATCATCAATGATCATAAACTAGTATTCAAGAGAAAGAGTACCATTATTGCAGCAACAGCAGCAGTTGGTGAAGATCATCTACAGGAAGATCAAGATCTAGTGGATGTGCTTCTTCAACTTCAAGAGTCTGGTGACCTCCAATTCCAACTCACAACCGACCATATCAAAGCTATCATTATGGATATGTACTCTGCTGGAAGTGAGACTTCAGCATCTACTATAGAGTGGACAATGTCGGAACTTATGAAAAATCCAAGAGCAATGGAGAAAGCACAAGCTGAGATATGCCAAGTTGTTGCAGGAAAGAAGAAAATTCAAGAGGCAGATATTAAATGCACAGTCAGTGGATATGATGTACCATCTGGAGCCAAGGTGTTGGTCAATGCTTGGGCAATAGGAAGAGACCCAGAACATTGGGGCGCCAGTGCTGATTGCTTTGAGCCTGAGAGATTTCAAGGTTCTTCCGTTGATTTTAAAGGGTCCGACTTTGAATTCATTCCATTTGGAGCTGGTAAGAGAATGTGTCCAGGCATCTCATTTGGAACTGCTGCTATTGAGATTGCACTTTCTCAGTTGCTCTACTACTTCAACTGGAAACTCCCAAATGGGACAAACCCACAAGAGCTTGACATGACTGAATCCATGGGATTGAGCACTAGGAAGAGAAATGAGTTGAAAGTGATTGCAATTCCTTTCTTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

242

Amino Acids

26.73

Weight (kDa)

4.79

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 118 2.1e-18 Cytochrome P450
p450 PF00067 119 - 233 1.3e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AcsI RAATTY 2 cut(s) 333, 512
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 3 cut(s) 61, 209, 378
AgsI TTSAA 8 cut(s) 49, 137, 143, 338, 476, 512, 610, 697
AhlI ACTAGT 1 cut(s) 40
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 4 cut(s) 191, 299, 530, 646
AluI AGCT 4 cut(s) 191, 299, 530, 646
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 218, 417
ApeKI GCWGC 3 cut(s) 71, 80, 569
ApoI RAATTY 2 cut(s) 333, 512
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 101, 164
AvaII GGWCC 1 cut(s) 501
BanI GGYRCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 3 cut(s) 83, 92, 556
BccI CCATC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 218, 417
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 3 cut(s) 41, 119, 678
BfmI CTRYAG 2 cut(s) 101, 240
BfoI RGCGCY 1 cut(s) 444
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 72, 81, 570
BlsI GCNGC 3 cut(s) 73, 82, 571
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 3 cut(s) 388, 442, 502
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 2 cut(s) 242, 561
BpmI CTGGAG 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 390, 663
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse1I ACTGG 2 cut(s) 444, 617
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 390, 663
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 114
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 3 cut(s) 291, 456, 605
BseNI ACTGG 2 cut(s) 444, 617
BseXI GCAGC 3 cut(s) 83, 92, 556
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 677
BslFI GGGAC 1 cut(s) 643
BsmAI GTCTC 2 cut(s) 218, 417
BsmFI GGGAC 1 cut(s) 643
Bso31I GGTCTC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 4 cut(s) 31, 94, 109, 115
Bsp19I CCATGG 1 cut(s) 663
BspCNI CTCAG 3 cut(s) 292, 457, 604
BspLI GGNNCC 3 cut(s) 388, 442, 502
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 2 cut(s) 444, 617
BssECI CCNNGG 2 cut(s) 390, 663
BssMI GATC 4 cut(s) 31, 94, 109, 115
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 390, 663
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 415, 677
BstACI GRCGYC 1 cut(s) 441
BstDEI CTNAG 3 cut(s) 300, 465, 591
BstDSI CCRYGG 1 cut(s) 663
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 34, 97, 112, 118
BstMAI GTCTC 2 cut(s) 218, 417
BstMBI GATC 4 cut(s) 31, 94, 109, 115
BstMWI GCNNNNNNNGC 2 cut(s) 77, 80
BstNI CCWGG 1 cut(s) 549
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 2 cut(s) 101, 240
BstV1I GCAGC 3 cut(s) 83, 92, 556
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 2 cut(s) 397, 435
BstYI RGATCY 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 370, 451
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 3 cut(s) 60, 208, 377
CviAII CATG 3 cut(s) 7, 652, 664
CviJI RGCY 6 cut(s) 191, 299, 389, 463, 530, 646
CviKI_1 RGCY 6 cut(s) 191, 299, 389, 463, 530, 646
CviQI GTAC 3 cut(s) 60, 208, 377
DdeI CTNAG 3 cut(s) 300, 465, 591
DinI GGCGCC 1 cut(s) 442
DpnI GATC 4 cut(s) 33, 96, 111, 117
DpnII GATC 4 cut(s) 31, 94, 109, 115
DraI TTTAAA 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 415, 677
EarI CTCTTC 2 cut(s) 415, 677
Eco130I CCWWGG 2 cut(s) 390, 663
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 390, 663
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 2 cut(s) 390, 663
FaeI CATG 3 cut(s) 10, 655, 667
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 1 cut(s) 643
FatI CATG 3 cut(s) 6, 651, 663
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 72, 81, 570
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 72, 81, 570
FspBI CTAG 3 cut(s) 41, 119, 678
GlaI GCGC 1 cut(s) 442
GluI GCNGC 3 cut(s) 72, 81, 570
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 444
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 3 cut(s) 10, 655, 667
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 3 cut(s) 10, 146, 659
HphI GGTGA 2 cut(s) 101, 164
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 259, 505
Hpy188III TCNNGA 6 cut(s) 14, 49, 113, 143, 338, 384
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 5 cut(s) 71, 320, 357, 584, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 80
HpyF3I CTNAG 3 cut(s) 300, 465, 591
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 3 cut(s) 10, 655, 667
HspAI GCGC 1 cut(s) 441
KasI GGCGCC 1 cut(s) 440
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 4 cut(s) 31, 94, 109, 115
LmnI GCTCC 2 cut(s) 386, 527
Lsp1109I GCAGC 3 cut(s) 83, 92, 556
LweI GCATC 2 cut(s) 242, 561
MaeI CTAG 3 cut(s) 41, 119, 678
MaeIII GTNAC 1 cut(s) 152
MalI GATC 4 cut(s) 33, 96, 111, 117
MboI GATC 4 cut(s) 31, 94, 109, 115
MboII GAAGA 7 cut(s) 104, 119, 125, 340, 432, 474, 694
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 4 cut(s) 161, 333, 512, 708
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 3 cut(s) 190, 237, 528
MnlI CCTC 2 cut(s) 167, 334
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 2 cut(s) 351, 495
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 77, 80
NarI GGCGCC 1 cut(s) 441
NcoI CCATGG 1 cut(s) 663
NdeII GATC 4 cut(s) 31, 94, 109, 115
NlaIII CATG 3 cut(s) 10, 655, 667
NlaIV GGNNCC 3 cut(s) 388, 442, 502
NmuCI GTSAC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 10, 659
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 3 cut(s) 73, 82, 571
PleI GAGTC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 388, 442, 502
PspPI GGNCC 1 cut(s) 501
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 3 cut(s) 61, 209, 378
RsaNI GTAC 3 cut(s) 60, 208, 377
SaqAI TTAA 2 cut(s) 351, 495
SatI GCNGC 3 cut(s) 72, 81, 570
Sau3AI GATC 4 cut(s) 31, 94, 109, 115
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 677
SetI ASST 7 cut(s) 159, 193, 301, 396, 481, 532, 648
SfaNI GCATC 2 cut(s) 242, 561
SfcI CTRYAG 2 cut(s) 101, 240
SfoI GGCGCC 1 cut(s) 442
SinI GGWCC 1 cut(s) 501
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 4 cut(s) 161, 333, 512, 708
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 3 cut(s) 41, 119, 678
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 2 cut(s) 390, 663
TaaI ACNGT 1 cut(s) 361
TasI AATT 4 cut(s) 161, 333, 512, 708
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 2 cut(s) 10, 659
Tru1I TTAA 2 cut(s) 351, 495
Tru9I TTAA 2 cut(s) 351, 495
TscAI CASTG 2 cut(s) 370, 451
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 71, 80, 569
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 33, 281, 505
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 2 cut(s) 370, 451
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 2 cut(s) 333, 512
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 3 cut(s) 41, 119, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.