Rh6DG373800

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
56859600 .. 56860670
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG373800.1

Sequence Viewer

Length: 882 bp
ATGAGAAAGATGCGAGACAAGATTGGAGTAGCACTTGACAGTATCATCGATGATCATAAGAGGAAAAGATCATTGAAGGATGATAAACCAGCAGGAGCTGATCATGATGATGAAGAGGAGGAAGATCTAGTCGACGTACTTCTAAAACTCCAGGAGTCAAGTAATAAGCTTGATTTCAAGTTGACAACTGGTCAAATCAAAGATGTCGTTATGGAAATCTTCGTGGCGGGGAGTGAGACATCAGCTACAACCCTAGAATGGGCGATGTCGGAGTTGCTGAGAAACCCAAGAGTAATGAAGAAGGCCCAAGCTGAGGTGCGACAATCAGTACTCCTTACAAGTGAACGAAAGAAATCAACAATAGAAGATACGACGTCTGACAATGTTCATCACAAATTGGATTACTTGAGATCAATTGTGAAAGAAACCCTGCGGTTGCACCCTCTTACTCCCTTGCTTTCAAGAGAATCAAGGGAAAGATGCGAAATCGATGGATATGAATTACCTGCGAAGACGAAAGCAATCATCAATGTATGGGCACTGGCAAGAGATCCAGAACAATGGGGGGATGATGCTGATTCCTTTAAGCCAGAGAGGTTCCTCCATGACTCTATGACTGCCAAAATCGACTTCAGAGGGAATAACTTTGAGCTCTTACCCTTTGGGGCCGGTCGAAGAATATGTCCGGGCATGTCATTTGCCAATGCAGTGATTGAGCCAACTCTTTTCCAATTGCTCTACCGCTTTGATTGGGAACTGGCTGATGGGATAAAACCAGATGAACTAGACATGACTGAGAGTTGGGGAGCAACATGCAGGAAAAGGGATGATTTGTACGTCATTGCCACCCCTCATTTCCTTGATTCAATGACCAAGTCCTAG

Protein Analysis

293

Amino Acids

33.56

Weight (kDa)

5.33

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 263 1.5e-59 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 132
AciI CCGC 3 cut(s) 227, 433, 742
AclWI GGATC 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 3 cut(s) 138, 330, 836
AfiI CCNNNNNNNGG 3 cut(s) 258, 259, 313
AgsI TTSAA 4 cut(s) 76, 178, 462, 867
AhdI GACNNNNNGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 5 cut(s) 98, 169, 245, 311, 652
AluI AGCT 5 cut(s) 98, 169, 245, 311, 652
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 2 cut(s) 9, 230
AlwI GGATC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 303, 666
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AspS9I GGNCC 2 cut(s) 304, 666
AsuC2I CCSGG 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 485, 758
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 2 cut(s) 52, 100
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 9, 230
BfaI CTAG 4 cut(s) 128, 254, 785, 880
BfuAI ACCTGC 1 cut(s) 514
BglII AGATCT 1 cut(s) 124
BmcAI AGTACT 1 cut(s) 330
Bme1390I CCNGG 2 cut(s) 152, 687
BmeRI GACNNNNNGTC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 304, 666
BmiI GGNNCC 2 cut(s) 599, 667
BmrFI CCNGG 2 cut(s) 152, 687
BmsI GCATC 2 cut(s) 470, 562
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 687
Bsa29I ATCGAT 2 cut(s) 48, 489
BsaHI GRCGYC 1 cut(s) 374
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 259, 313
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 3 cut(s) 193, 546, 762
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 2 cut(s) 48, 489
BseGI GGATG 3 cut(s) 85, 574, 832
BseLI CCNNNNNNNGG 3 cut(s) 258, 259, 313
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 3 cut(s) 269, 303, 786
BseNI ACTGG 3 cut(s) 193, 546, 762
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 541
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 2 cut(s) 305, 668
BshVI ATCGAT 2 cut(s) 48, 489
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 2 cut(s) 669, 686
BslI CCNNNNNNNGG 3 cut(s) 258, 259, 313
BsmAI GTCTC 2 cut(s) 9, 230
BsnI GGCC 2 cut(s) 305, 668
Bsp1286I GDGCHC 2 cut(s) 541, 654
Bsp143I GATC 6 cut(s) 52, 68, 100, 124, 410, 550
BspACI CCGC 3 cut(s) 227, 433, 742
BspANI GGCC 2 cut(s) 305, 668
BspCNI CTCAG 3 cut(s) 270, 304, 787
BspDI ATCGAT 2 cut(s) 48, 489
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 599, 667
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 668
BsrI ACTGG 3 cut(s) 193, 546, 762
BssAI RCCGGY 1 cut(s) 668
BssMI GATC 6 cut(s) 52, 68, 100, 124, 410, 550
BssNI GRCGYC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 278, 312, 795
BstF5I GGATG 3 cut(s) 85, 574, 832
BstKTI GATC 6 cut(s) 55, 71, 103, 127, 413, 553
BstMAI GTCTC 2 cut(s) 9, 230
BstMBI GATC 6 cut(s) 52, 68, 100, 124, 410, 550
BstMCI CGRYCG 1 cut(s) 673
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 694, 816
BstSCI CCNGG 2 cut(s) 150, 685
BstSLI GKGCMC 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 124, 550
BstXI CCANNNNNNTGG 1 cut(s) 561
BstYI RGATCY 2 cut(s) 124, 550
Bsu15I ATCGAT 2 cut(s) 48, 489
BsuRI GGCC 2 cut(s) 305, 668
BsuTUI ATCGAT 2 cut(s) 48, 489
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 3 cut(s) 85, 574, 832
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 539, 714
BveI ACCTGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 2 cut(s) 304, 666
ClaI ATCGAT 2 cut(s) 48, 489
Csp6I GTAC 3 cut(s) 137, 329, 835
CviAII CATG 5 cut(s) 104, 605, 691, 790, 813
CviQI GTAC 3 cut(s) 137, 329, 835
DdeI CTNAG 3 cut(s) 278, 312, 795
DpnI GATC 6 cut(s) 54, 70, 102, 126, 412, 552
DpnII GATC 6 cut(s) 52, 68, 100, 124, 410, 550
DriI GACNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 5 cut(s) 107, 608, 694, 793, 816
FatI CATG 5 cut(s) 103, 604, 690, 789, 812
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 2 cut(s) 52, 100
FblI GTMKAC 1 cut(s) 132
FokI GGATG 3 cut(s) 92, 581, 839
FriOI GRGCYC 1 cut(s) 654
FspBI CTAG 4 cut(s) 128, 254, 785, 880
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 2 cut(s) 305, 668
HapII CCGG 2 cut(s) 669, 686
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 5 cut(s) 107, 608, 694, 793, 816
HincII GTYRAC 2 cut(s) 133, 183
HindII GTYRAC 2 cut(s) 133, 183
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 5 cut(s) 155, 467, 578, 608, 863
HpaII CCGG 2 cut(s) 669, 686
Hpy166II GTNNAC 3 cut(s) 133, 183, 344
Hpy188I TCNGA 3 cut(s) 271, 379, 635
Hpy188III TCNNGA 3 cut(s) 104, 462, 554
Hpy8I GTNNAC 3 cut(s) 133, 183, 344
Hpy99I CGWCG 2 cut(s) 137, 376
HpyAV CCTTC 2 cut(s) 70, 295
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 3 cut(s) 135, 374, 837
HpyCH4V TGCA 3 cut(s) 439, 707, 816
HpyF3I CTNAG 3 cut(s) 278, 312, 795
HpySE526I ACGT 3 cut(s) 135, 374, 837
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 5 cut(s) 107, 608, 694, 793, 816
Ksp22I TGATCA 2 cut(s) 52, 100
Kzo9I GATC 6 cut(s) 52, 68, 100, 124, 410, 550
LmnI GCTCC 2 cut(s) 95, 806
LweI GCATC 2 cut(s) 470, 562
MaeI CTAG 4 cut(s) 128, 254, 785, 880
MaeII ACGT 3 cut(s) 135, 374, 837
MalI GATC 6 cut(s) 54, 70, 102, 126, 412, 552
MboI GATC 6 cut(s) 52, 68, 100, 124, 410, 550
MboII GAAGA 7 cut(s) 125, 134, 211, 310, 377, 523, 687
MfeI CAATTG 2 cut(s) 414, 731
MflI RGATCY 2 cut(s) 124, 550
MhlI GDGCHC 2 cut(s) 541, 654
MluCI AATT 4 cut(s) 395, 414, 500, 731
MlyI GAGTC 2 cut(s) 164, 602
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 9 cut(s) 54, 109, 112, 307, 453, 588, 611, 629, 861
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 2 cut(s) 669, 686
MspR9I CCNGG 2 cut(s) 152, 687
MunI CAATTG 2 cut(s) 414, 731
MvaI CCWGG 1 cut(s) 152
NciI CCSGG 1 cut(s) 687
NdeII GATC 6 cut(s) 52, 68, 100, 124, 410, 550
NlaIII CATG 5 cut(s) 107, 608, 694, 793, 816
NlaIV GGNNCC 2 cut(s) 599, 667
NspI RCATGY 2 cut(s) 694, 816
PagI TCATGA 1 cut(s) 103
PfeI GAWTC 3 cut(s) 467, 578, 863
PflFI GACNNNGTC 1 cut(s) 874
PfoI TCCNGGA 1 cut(s) 150
PleI GAGTC 2 cut(s) 163, 602
PpsI GAGTC 2 cut(s) 163, 602
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 599, 667
PspPI GGNCC 2 cut(s) 304, 666
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 124, 550
PsyI GACNNNGTC 1 cut(s) 874
RsaI GTAC 3 cut(s) 138, 330, 836
RsaNI GTAC 3 cut(s) 137, 329, 835
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 654
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 585
Sau3AI GATC 6 cut(s) 52, 68, 100, 124, 410, 550
Sau96I GGNCC 2 cut(s) 304, 666
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 2 cut(s) 164, 602
ScrFI CCNGG 2 cut(s) 152, 687
SduI GDGCHC 2 cut(s) 541, 654
SfaNI GCATC 2 cut(s) 470, 562
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 4 cut(s) 395, 414, 500, 731
SsiI CCGC 3 cut(s) 227, 433, 742
SspMI CTAG 4 cut(s) 128, 254, 785, 880
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 150, 685
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 3 cut(s) 138, 377, 840
TaqI TCGA 5 cut(s) 48, 132, 489, 627, 673
TasI AATT 4 cut(s) 395, 414, 500, 731
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 3 cut(s) 467, 578, 863
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 2 cut(s) 546, 714
TspDTI ATGAA 5 cut(s) 126, 311, 377, 513, 795
TspRI CASTG 2 cut(s) 546, 714
Tth111I GACNNNGTC 1 cut(s) 874
XceI RCATGY 2 cut(s) 694, 816
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 4 cut(s) 128, 254, 785, 880
ZraI GACGTC 1 cut(s) 375
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.