RchiOBHm_Chr5g0043921

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
39007629 .. 39007976
348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32215

Sequence Viewer

Length: 348 bp
ATGTCAGAACTGATGAAATATCCAAGAATCATGAAAAGGGCACAGGGTGAGGTGAGAGAAGTGTATGACCAAAAACAGCAGGCAAACGAAACAGGCATTAAAGAGATGAAATATTTAAAGTTGGTTATTCAAGAGACACTGAGGTTACACCCTGTTGTTCCCCTGTTACTTCCGCGAGAATGTGGAGAGAGGTGTGAGATTGATGGATATGAAATACCTGTCAAAACAAAGGTAATTGTGAATGCTTGGGCAATCGGAAGAGATCCCAATTACTGGACTGAGCCCGAGACCTTTTATCCAGAGAGATTCCTTGATAGCTCTTTTGACTACCAAGGAACGAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.62

Weight (kDa)

5.49

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 106 3e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 273
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 128, 281
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 59, 64
AvaI CYCGRG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 285
BccI CCATC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 128, 281
BmeT110I CYCGRG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 131, 270
BseNI ACTGG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 2 cut(s) 128, 281
BsmI GAATGC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 43, 285
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 132, 271
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 140, 279
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 128, 281
BstMBI GATC 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 43
BstUI CGCG 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 30
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 283, 318
CviKI_1 RGCY 2 cut(s) 283, 318
DdeI CTNAG 2 cut(s) 140, 279
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 117
DraIII CACNNNGTG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 66, 210
FatI CATG 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 285
Hin1II CATG 1 cut(s) 34
HinfI GANTC 2 cut(s) 27, 306
HphI GGTGA 2 cut(s) 59, 64
Hpy188I TCNGA 2 cut(s) 7, 257
Hpy188III TCNNGA 3 cut(s) 31, 131, 299
HpyF3I CTNAG 2 cut(s) 140, 279
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 8 cut(s) 29, 65, 78, 165, 176, 231, 259, 312
MaeIII GTNAC 2 cut(s) 144, 165
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 270
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 43, 285
MluCI AATT 2 cut(s) 234, 268
MnlI CCTC 3 cut(s) 43, 135, 183
MseI TTAA 2 cut(s) 99, 116
Mva1269I GAATGC 1 cut(s) 247
MvnI CGCG 1 cut(s) 175
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 34
PagI TCATGA 1 cut(s) 30
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 27, 306
PflMI CCANNNNNTGG 1 cut(s) 273
PsuI RGATCY 1 cut(s) 262
SaqAI TTAA 2 cut(s) 99, 116
Sau3AI GATC 1 cut(s) 262
SduI GDGCHC 2 cut(s) 43, 285
SetI ASST 7 cut(s) 54, 146, 194, 220, 234, 293, 320
Sse9I AATT 2 cut(s) 234, 268
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 113
StyI CCWWGG 1 cut(s) 331
TasI AATT 2 cut(s) 234, 268
TfiI GAWTC 2 cut(s) 27, 306
Tru1I TTAA 2 cut(s) 99, 116
Tru9I TTAA 2 cut(s) 99, 116
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 4 cut(s) 29, 47, 122, 225
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.