Rh2CG640100

Premnaspirodiene oxygenase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
81031598 .. 81032724
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG640100.1

Sequence Viewer

Length: 558 bp
ATGAAGAAGATGCAAAAAAAGTTTGGACAGATTCTTGAGAGTATCATCAACGATCATAAGATCAAAAGTCAAGGCAATGAGATTGACAAACCAGAGGAAGATCTTGTTGACGTACTTCTCAAACTTCAGGAGTCCAAGAAGCTCGAATTCAACTTCACAACCGATCAGATCAAAGATGTCATTATGGAGATATTCTCAGCAGGGAGTGAGACTACAGCTACCACCATAGAATGGGCAATGTCACAATTGATGAGAAATCCAACAGTAATGAGTAAGGCTCAAGCCGAGGTTCGACGAGTCTTTCAAGGAAAGCCGAAAATTGAAGAAGCAGACGTTCAAAAACTGGAATACTTGAGAGCAGTGGTAAAAGAAACACTGAGATTACACCCTCCAGCACCATTATTCCCAAGAGAATCAAGAGAAAGATGTGAAATCGGAGGATACGAAGTCCAAGCGAAAACCAAAATGATCATCAATGAATGGCCATTGGAAGAGACCCGGAGAGTTGGGTTGAAGCGGAGTCGTTTAAGCCAGAGAGGTTCCCCATGGTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

21.58

Weight (kDa)

9.12

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 163 1.2e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 231, 549
AgsI TTSAA 5 cut(s) 151, 305, 323, 338, 514
AluBI AGCT 2 cut(s) 142, 218
AluI AGCT 2 cut(s) 142, 218
Alw26I GTCTC 2 cut(s) 203, 488
AoxI GGCC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 499
BalI TGGCCA 1 cut(s) 484
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 203, 488
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 434
BglII AGATCT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 499
BplI GAGNNNNNCTC 4 cut(s) 179, 211, 262, 294
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 56, 264, 373
BpuMI CCSGG 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 285, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 549
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 82, 243
BseDI CCNNGG 2 cut(s) 285, 545
BseLI CCNNNNNNNGG 2 cut(s) 231, 549
BseMI GCAATG 2 cut(s) 82, 243
BseMII CTCAG 2 cut(s) 210, 368
BseNI ACTGG 1 cut(s) 348
BshFI GGCC 1 cut(s) 484
BsiSI CCGG 1 cut(s) 499
BslI CCNNNNNNNGG 2 cut(s) 231, 549
BsmAI GTCTC 2 cut(s) 203, 488
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 1 cut(s) 488
Bsp143I GATC 6 cut(s) 52, 60, 100, 163, 168, 468
Bsp19I CCATGG 1 cut(s) 545
BspACI CCGC 1 cut(s) 517
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 209, 369
BspLI GGNNCC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 2 cut(s) 82, 243
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 285, 545
BssMI GATC 6 cut(s) 52, 60, 100, 163, 168, 468
BssT1I CCWWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 196, 377
BstDSI CCRYGG 1 cut(s) 545
BstKTI GATC 6 cut(s) 55, 63, 103, 166, 171, 471
BstMAI GTCTC 2 cut(s) 203, 488
BstMBI GATC 6 cut(s) 52, 60, 100, 163, 168, 468
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 1 cut(s) 484
BtgI CCRYGG 1 cut(s) 545
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 374
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 546
CviJI RGCY 7 cut(s) 142, 218, 278, 284, 313, 484, 531
CviKI_1 RGCY 7 cut(s) 142, 218, 278, 284, 313, 484, 531
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 196, 377
DpnI GATC 6 cut(s) 54, 62, 102, 165, 170, 470
DpnII GATC 6 cut(s) 52, 60, 100, 163, 168, 468
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 545
Eco31I GGTCTC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 1 cut(s) 549
FaiI YATR 4 cut(s) 57, 185, 227, 547
FatI CATG 1 cut(s) 545
FbaI TGATCA 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 484
HapII CCGG 1 cut(s) 499
Hin1II CATG 1 cut(s) 549
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 31, 131, 297, 413, 520
HpaII CCGG 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 168, 437, 557
Hpy188III TCNNGA 3 cut(s) 35, 128, 417
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 2 cut(s) 111, 333
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 196, 377
HpySE526I ACGT 2 cut(s) 111, 333
Hsp92II CATG 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 6 cut(s) 52, 60, 100, 163, 168, 468
LpnPI CCDG 7 cut(s) 105, 113, 186, 329, 405, 512, 545
MaeII ACGT 2 cut(s) 111, 333
MaeIII GTNAC 1 cut(s) 240
MalI GATC 6 cut(s) 54, 62, 102, 165, 170, 470
MboI GATC 6 cut(s) 52, 60, 100, 163, 168, 468
MboII GAAGA 5 cut(s) 16, 19, 110, 335, 503
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 3 cut(s) 146, 245, 318
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 3 cut(s) 140, 306, 529
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 5 cut(s) 88, 280, 399, 431, 530
Mox20I TGGCCA 1 cut(s) 484
MscI TGGCCA 1 cut(s) 484
MseI TTAA 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 484
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 1 cut(s) 499
MunI CAATTG 1 cut(s) 245
NciI CCSGG 1 cut(s) 499
NcoI CCATGG 1 cut(s) 545
NdeII GATC 6 cut(s) 52, 60, 100, 163, 168, 468
NlaIII CATG 1 cut(s) 549
NlaIV GGNNCC 1 cut(s) 541
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 2 cut(s) 31, 413
PflMI CCANNNNNTGG 1 cut(s) 231
PleI GAGTC 3 cut(s) 139, 305, 528
PpsI GAGTC 3 cut(s) 139, 305, 528
PspN4I GGNNCC 1 cut(s) 541
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 527
Sau3AI GATC 6 cut(s) 52, 60, 100, 163, 168, 468
SchI GAGTC 3 cut(s) 140, 306, 529
ScrFI CCNGG 1 cut(s) 499
SetI ASST 6 cut(s) 114, 144, 220, 291, 336, 541
SfcI CTRYAG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 35, 279, 352
SmoI CTYRAG 3 cut(s) 35, 279, 352
Sse9I AATT 3 cut(s) 146, 245, 318
SsiI CCGC 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 2 cut(s) 114, 336
TaqI TCGA 2 cut(s) 144, 292
TasI AATT 3 cut(s) 146, 245, 318
TfiI GAWTC 2 cut(s) 31, 413
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 2 cut(s) 366, 381
TseFI GTSAC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 17, 492
TspRI CASTG 2 cut(s) 366, 381
Van91I CCANNNNNTGG 1 cut(s) 231
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.