pycom17g00880

iron ion binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
637916 .. 639221
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00880.2

Sequence Viewer

Length: 906 bp
ATGGTGCGGACAGAAATGGCAGCTCACAAGCATGTGCAGCTCAGCAAGCATGTGTGCTCCAGTGGAGGAATGATGAGGAGCATGAGTGAAGACATGGCAGCTCAGGAAACAAACCCTACTAACAACCCACCAACTTCAATAGGTACGATTCTCGAAAATATCATCAACGATCATAGGATCAAACGATCCAAAGGGGACTTGAAGATCAGTAGTGCTAGTACTACTACAGCAGGCAATGACAAAGCGGAGGAGGAAAATTTTGTTGGCGTACTTCTAAAACTTAAAGAGTCCAATAAGGCGGATTTCAACTTCACAACCAAGCAGATCAAAGATATCATTATGGTGAGTAATGTAGGCTTGCTTTGTTGTACTGACATCTTCGGTGCAGGAAGCAAGACTTCAGCTACTACCTTAGAATTGGCAATGTTAGAGTTGATGAGAAACCCAAGAGTCATGAAGAGGGTTCAAGCTGAAGTGAGACAAGATGTTCTAAAAATGGACTACTTGAAATCAGTGGTGAAGGAGACTCTGAGGTTACACTCTCCAGCCCCTTTTCTCCCAAGACAAGCAAGGGACACAGTTCAAATTAGCGGATTCAATGTACCAGTTAAATCAAAAGGAGCAGATGCTGAGTGTTTTAAGCCAGAGAGGTTTCATGGCTCTTCCGTTGACTTTAAGGGTTTTGACTTTGAGTTCATTCCGTTTGGGGCCGGCAGAAGAATATGTCCAGGCATGTCCTTTGGTGTTACCACGATTGAACTTGTTCTTGCTGAATTGCTCAACCGCTTCAATTGGAAACTAGCGAATGGGATGAATCTAGATGAACTTGACATGGCGGAGAGGTTTGGACTGAGCTGTAGGAGAAAGAATGCGTTGTACGTAATTGCCACCCCACATTTTACCTAA

Protein Analysis

302

Amino Acids

33.47

Weight (kDa)

8.98

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 7, 245, 299, 591, 784, 836
AclWI GGATC 2 cut(s) 180, 185
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 384, 492
AfaI GTAC 6 cut(s) 145, 220, 270, 370, 603, 878
AgsI TTSAA 9 cut(s) 138, 202, 307, 467, 508, 584, 598, 758, 790
AjnI CCWGG 1 cut(s) 727
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 6 cut(s) 23, 40, 101, 404, 470, 855
AluI AGCT 6 cut(s) 23, 40, 101, 404, 470, 855
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 472, 518
AlwI GGATC 2 cut(s) 180, 185
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 1 cut(s) 708
ApeKI GCWGC 3 cut(s) 20, 37, 98
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 1 cut(s) 708
AsuHPI GGTGA 2 cut(s) 355, 529
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 32, 49, 110
BciT130I CCWGG 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 472, 518
BfaI CTAG 3 cut(s) 216, 800, 818
BfmI CTRYAG 2 cut(s) 225, 856
BisI GCNGC 3 cut(s) 21, 38, 99
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 3 cut(s) 22, 39, 100
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 708
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 43, 528
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 880
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 2 cut(s) 60, 605
Bse3DI GCAATG 2 cut(s) 241, 429
BseBI CCWGG 1 cut(s) 729
BseGI GGATG 1 cut(s) 816
BseMI GCAATG 2 cut(s) 241, 429
BseMII CTCAG 5 cut(s) 55, 116, 521, 621, 842
BseNI ACTGG 2 cut(s) 60, 605
BseRI GAGGAG 2 cut(s) 91, 263
BseXI GCAGC 3 cut(s) 32, 49, 110
BsgI GTGCAG 2 cut(s) 56, 405
BshFI GGCC 1 cut(s) 710
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 209, 587
BsmAI GTCTC 2 cut(s) 472, 518
BsmFI GGGAC 2 cut(s) 209, 587
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 5 cut(s) 169, 177, 185, 204, 324
Bsp1720I GCTNAGC 1 cut(s) 41
BspACI CCGC 6 cut(s) 7, 245, 299, 591, 784, 836
BspANI GGCC 1 cut(s) 710
BspCNI CTCAG 5 cut(s) 54, 115, 522, 622, 843
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 709
BspPI GGATC 2 cut(s) 180, 185
BspQI GCTCTTC 1 cut(s) 667
BsrDI GCAATG 2 cut(s) 241, 429
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 2 cut(s) 60, 605
BssAI RCCGGY 1 cut(s) 710
BssMI GATC 5 cut(s) 169, 177, 185, 204, 324
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 2 cut(s) 452, 667
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 4 cut(s) 47, 232, 359, 712
BstDEI CTNAG 6 cut(s) 41, 102, 412, 530, 630, 851
BstF5I GGATG 1 cut(s) 816
BstKTI GATC 5 cut(s) 172, 180, 188, 207, 327
BstMAI GTCTC 2 cut(s) 472, 518
BstMBI GATC 5 cut(s) 169, 177, 185, 204, 324
BstMWI GCNNNNNNNGC 2 cut(s) 37, 46
BstNI CCWGG 1 cut(s) 729
BstNSI RCATGY 3 cut(s) 35, 53, 736
BstSCI CCNGG 1 cut(s) 727
BstSFI CTRYAG 2 cut(s) 225, 856
BstSNI TACGTA 1 cut(s) 880
BstV1I GCAGC 3 cut(s) 32, 49, 110
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 710
BtsCI GGATG 1 cut(s) 816
BtsIMutI CAGTG 2 cut(s) 67, 519
Cac8I GCNNGC 4 cut(s) 47, 232, 359, 712
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 1 cut(s) 708
Csp6I GTAC 6 cut(s) 144, 219, 269, 369, 602, 877
CviAII CATG 8 cut(s) 32, 50, 82, 94, 454, 656, 733, 832
CviQI GTAC 6 cut(s) 144, 219, 269, 369, 602, 877
DdeI CTNAG 6 cut(s) 41, 102, 412, 530, 630, 851
DpnI GATC 5 cut(s) 171, 179, 187, 206, 326
DpnII GATC 5 cut(s) 169, 177, 185, 204, 324
Eam1104I CTCTTC 2 cut(s) 452, 667
EarI CTCTTC 2 cut(s) 452, 667
EciI GGCGGA 2 cut(s) 314, 851
Eco105I TACGTA 1 cut(s) 880
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 384, 492
EcoRII CCWGG 1 cut(s) 727
EcoRV GATATC 1 cut(s) 334
FaeI CATG 8 cut(s) 35, 53, 85, 97, 457, 659, 736, 835
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FaqI GGGAC 2 cut(s) 209, 587
FatI CATG 8 cut(s) 31, 49, 81, 93, 453, 655, 732, 831
Fnu4HI GCNGC 3 cut(s) 21, 38, 99
FokI GGATG 1 cut(s) 823
Fsp4HI GCNGC 3 cut(s) 21, 38, 99
FspBI CTAG 3 cut(s) 216, 800, 818
GluI GCNGC 3 cut(s) 21, 38, 99
GsuI CTGGAG 2 cut(s) 43, 528
HaeIII GGCC 1 cut(s) 710
HapII CCGG 1 cut(s) 711
Hin1II CATG 8 cut(s) 35, 53, 85, 97, 457, 659, 736, 835
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 6 cut(s) 148, 287, 450, 526, 594, 814
HpaII CCGG 1 cut(s) 711
HphI GGTGA 2 cut(s) 355, 529
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 4 cut(s) 104, 152, 454, 818
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 1 cut(s) 879
HpyCH4V TGCA 2 cut(s) 37, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 46
HpyF3I CTNAG 6 cut(s) 41, 102, 412, 530, 630, 851
HpySE526I ACGT 1 cut(s) 879
Hsp92II CATG 8 cut(s) 35, 53, 85, 97, 457, 659, 736, 835
KroI GCCGGC 1 cut(s) 710
KroNI GCCGGC 1 cut(s) 712
Kzo9I GATC 5 cut(s) 169, 177, 185, 204, 324
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 3 cut(s) 62, 78, 620
Lsp1109I GCAGC 3 cut(s) 32, 49, 110
LweI GCATC 1 cut(s) 616
MaeI CTAG 3 cut(s) 216, 800, 818
MaeII ACGT 1 cut(s) 879
MaeIII GTNAC 2 cut(s) 534, 745
MalI GATC 5 cut(s) 171, 179, 187, 206, 326
MboI GATC 5 cut(s) 169, 177, 185, 204, 324
MboII GAAGA 6 cut(s) 101, 214, 370, 469, 654, 729
MfeI CAATTG 1 cut(s) 790
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 6 cut(s) 256, 416, 585, 773, 790, 882
MlyI GAGTC 3 cut(s) 296, 459, 520
MnlI CCTC 8 cut(s) 59, 69, 241, 244, 453, 525, 642, 834
MroNI GCCGGC 1 cut(s) 710
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 4 cut(s) 282, 609, 639, 675
MslI CAYNNNNRTG 2 cut(s) 30, 341
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 729
MunI CAATTG 1 cut(s) 790
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 37, 46
NaeI GCCGGC 1 cut(s) 712
NdeII GATC 5 cut(s) 169, 177, 185, 204, 324
NgoMIV GCCGGC 1 cut(s) 710
NlaIII CATG 8 cut(s) 35, 53, 85, 97, 457, 659, 736, 835
NlaIV GGNNCC 1 cut(s) 709
NspI RCATGY 3 cut(s) 35, 53, 736
PagI TCATGA 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 667
PctI GAATGC 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 712
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 3 cut(s) 148, 594, 814
PkrI GCNGC 3 cut(s) 22, 39, 100
PleI GAGTC 3 cut(s) 295, 458, 520
PpsI GAGTC 3 cut(s) 295, 458, 520
Ppu21I YACGTR 1 cut(s) 880
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 629
RsaI GTAC 6 cut(s) 145, 220, 270, 370, 603, 878
RsaNI GTAC 6 cut(s) 144, 219, 269, 369, 602, 877
RseI CAYNNNNRTG 2 cut(s) 30, 341
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 4 cut(s) 282, 609, 639, 675
SatI GCNGC 3 cut(s) 21, 38, 99
Sau3AI GATC 5 cut(s) 169, 177, 185, 204, 324
Sau96I GGNCC 1 cut(s) 708
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 3 cut(s) 296, 459, 520
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 1 cut(s) 59
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 2 cut(s) 225, 856
SmiMI CAYNNNNRTG 2 cut(s) 30, 341
SnaBI TACGTA 1 cut(s) 880
Sse9I AATT 6 cut(s) 256, 416, 585, 773, 790, 882
SsiI CCGC 6 cut(s) 7, 245, 299, 591, 784, 836
SspMI CTAG 3 cut(s) 216, 800, 818
StyD4I CCNGG 1 cut(s) 727
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 1 cut(s) 882
TaqI TCGA 1 cut(s) 153
TasI AATT 6 cut(s) 256, 416, 585, 773, 790, 882
TatI WGTACW 2 cut(s) 218, 368
TfiI GAWTC 3 cut(s) 148, 594, 814
Tru1I TTAA 4 cut(s) 282, 609, 639, 675
Tru9I TTAA 4 cut(s) 282, 609, 639, 675
TscAI CASTG 2 cut(s) 67, 519
TseI GCWGC 3 cut(s) 20, 37, 98
TspDTI ATGAA 5 cut(s) 470, 644, 685, 827, 837
TspGWI ACGGA 2 cut(s) 655, 690
TspRI CASTG 2 cut(s) 67, 519
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 3 cut(s) 35, 53, 736
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 3 cut(s) 216, 800, 818
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.