RchiOBHm_Chr5g0054511

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
57131202 .. 57131805
604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33166

Sequence Viewer

Length: 516 bp
ATGACATATGGAATGACGGCTAGAGTGGCTTTGGGTAACAAATGCAAAGAACATGAAGCACTCATAACAGCTATTACGGAAGATGCAGAGGCAACATGTAGGTTTGCAGTCACGGATGTGTTCCCTTCTATCAAAGTACTTCATGTAATCAGTGGGATGAGGCCTAAACTTGAGAAGATTCATAGAGGACTCGATGAGATACTCGAAAACATTGTTAAAGATCATAAAGCTACCAAGACTAGAGGCATGGATGGAGAAAATGATCTGCTAAGCTTTCTTCTAAATCTGCAACAACTCGGTGTGCTTGAAGTTCCCTTAACAAATGACCATATCAAAGGGATTATGCTGGTTACTGGGAGTGAAACATCATGTTCAACTGTGGAGTGGGCAATGTCGAAAATGGTAAAAACGCCACAAGTGATGGAAAAGGTACAAGCAGAGGTGAGGCAAGTCTTTGGTGCTAAAGGAAATGTCGATGAAACAGGTCTTCAGGATCTGAAATTCCGAAGGCGATGA
Functional Annotation

Protein Analysis

171

Amino Acids

19.05

Weight (kDa)

6.97

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 20 - 168 3.1e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 501
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 2 cut(s) 138, 432
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 2 cut(s) 308, 375
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 3 cut(s) 71, 230, 273
AluI AGCT 3 cut(s) 71, 230, 273
AlwI GGATC 1 cut(s) 501
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 479
BccI CCATC 2 cut(s) 245, 415
BceAI ACGGC 1 cut(s) 33
BfaI CTAG 2 cut(s) 21, 240
BlpI GCTNAGC 1 cut(s) 269
BmcAI AGTACT 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 479
Bpu1102I GCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 396
BseGI GGATG 3 cut(s) 121, 162, 256
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 358
BshFI GGCC 1 cut(s) 163
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 3 cut(s) 220, 262, 493
Bsp1720I GCTNAGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 358
BssMI GATC 3 cut(s) 220, 262, 493
Bst4CI ACNGT 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 121, 162, 256
BstKTI GATC 3 cut(s) 223, 265, 496
BstMBI GATC 3 cut(s) 220, 262, 493
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 3 cut(s) 121, 162, 256
BtsIMutI CAGTG 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 496
Csp6I GTAC 2 cut(s) 137, 431
CviAII CATG 5 cut(s) 53, 96, 143, 247, 369
CviJI RGCY 6 cut(s) 20, 29, 71, 163, 230, 273
CviKI_1 RGCY 6 cut(s) 20, 29, 71, 163, 230, 273
CviQI GTAC 2 cut(s) 137, 431
DdeI CTNAG 1 cut(s) 269
DpnI GATC 3 cut(s) 222, 264, 495
DpnII GATC 3 cut(s) 220, 262, 493
Eco147I AGGCCT 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 473
FaeI CATG 5 cut(s) 56, 99, 146, 250, 372
FatI CATG 5 cut(s) 52, 95, 142, 246, 368
FauNDI CATATG 1 cut(s) 7
FokI GGATG 3 cut(s) 128, 169, 263
FspBI CTAG 2 cut(s) 21, 240
HaeIII GGCC 1 cut(s) 163
Hin1II CATG 5 cut(s) 56, 99, 146, 250, 372
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 2 cut(s) 178, 189
HphI GGTGA 1 cut(s) 454
Hpy188I TCNGA 2 cut(s) 498, 506
Hpy188III TCNNGA 1 cut(s) 491
HpyAV CCTTC 2 cut(s) 135, 501
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 4 cut(s) 45, 86, 107, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 5 cut(s) 56, 99, 146, 250, 372
Kzo9I GATC 3 cut(s) 220, 262, 493
LpnPI CCDG 4 cut(s) 332, 339, 468, 476
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 21, 240
MaeIII GTNAC 3 cut(s) 35, 109, 349
MalI GATC 3 cut(s) 222, 264, 495
MboI GATC 3 cut(s) 220, 262, 493
MboII GAAGA 4 cut(s) 92, 187, 269, 479
MflI RGATCY 1 cut(s) 493
MluCI AATT 1 cut(s) 500
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 6 cut(s) 82, 153, 179, 236, 433, 438
MseI TTAA 2 cut(s) 216, 317
MslI CAYNNNNRTG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 7
NdeII GATC 3 cut(s) 220, 262, 493
NlaIII CATG 5 cut(s) 56, 99, 146, 250, 372
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 116
PceI AGGCCT 1 cut(s) 163
PciI ACATGT 1 cut(s) 95
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PscI ACATGT 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 2 cut(s) 138, 432
RsaNI GTAC 2 cut(s) 137, 431
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 216, 317
Sau3AI GATC 3 cut(s) 220, 262, 493
ScaI AGTACT 1 cut(s) 138
SchI GAGTC 1 cut(s) 183
SetI ASST 7 cut(s) 73, 104, 232, 275, 432, 444, 487
SfaNI GCATC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 500
SseBI AGGCCT 1 cut(s) 163
SspMI CTAG 2 cut(s) 21, 240
StuI AGGCCT 1 cut(s) 163
TaaI ACNGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 192, 204, 395, 474
TasI AATT 1 cut(s) 500
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 216, 317
Tru9I TTAA 2 cut(s) 216, 317
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 69, 131, 170, 492
TspGWI ACGGA 2 cut(s) 92, 128
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 500
XceI RCATGY 1 cut(s) 99
XspI CTAG 2 cut(s) 21, 240
ZrmI AGTACT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.