Rh3BG004900

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000132
Physical Location & Seq
Reverse (-)
388978 .. 390208
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG004900.1

Sequence Viewer

Length: 597 bp
ATGAGCCATACTAGTCTAAATGATGATGGTATTCTTCAGTTGCCCCCAGGGCCATGGAAGCTACCTCTTATCGGAAACTTGCATCAGTTAGCTTTAGCTGCTGGTTCTTTACCACATCATTTCTTAACAGACTTGGCCAAGAAATACGGCCCTATGATGCACCTCAAACTTGGACAAGTATTAGCCATTGTCATATCATCACTAGACTTAGCGAAGCAAGTGATGAAGATTTTCTCAGACCGACCTTGTCTTCTTGCTTTGGAAATCATGTCTTATAATTATTCAGGCATCATTGCTAGCCCTTGTAATGATTACTGGAGAGAAATGCGCAAGATTTGTGGGTTGGAGCTCTTAAGTGCAAAGCGTGTGCAGTCATTTTCATCATTGAGAGAAGAAGAGACATGGAATCTTGTGCAGTCAATTACTCAATTATCACAGCCAATGAACCTTAGCGAGATGATTTTCTCCACCTTAAACAGCATTACAGCTCGCACAGCCTTAGGGAAAAAATGCAAACACCAACAAGAGTTTACATCACTGGTCCACGAAACGATTAGGCTTTCTCCATCATGTCACAGGGACCAAGTCTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

198

Amino Acids

22.27

Weight (kDa)

8.61

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 181 2.3e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
Acc16I TGCGCA 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 71
AflII CTTAAG 1 cut(s) 352
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 5 cut(s) 61, 92, 98, 349, 488
AluI AGCT 5 cut(s) 61, 92, 98, 349, 488
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 3 cut(s) 50, 135, 148
ApeKI GCWGC 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 4 cut(s) 50, 149, 541, 580
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 2 cut(s) 541, 580
AxyI CCTNAGG 1 cut(s) 499
BalI TGGCCA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 242, 580
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 20, 574
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 3 cut(s) 12, 203, 297
BfrI CTTAAG 1 cut(s) 352
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 541, 580
BmgT120I GGNCC 4 cut(s) 50, 149, 541, 580
BmiI GGNNCC 1 cut(s) 581
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 3 cut(s) 91, 147, 297
BmtI GCTAGC 1 cut(s) 300
BpiI GAAGAC 2 cut(s) 242, 580
BpmI CTGGAG 1 cut(s) 337
Bpu10I CCTNAGC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 46, 47, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 320, 543
Bse21I CCTNAGG 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 46, 47, 53
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 320, 543
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 2 cut(s) 389, 434
BshFI GGCC 3 cut(s) 52, 137, 150
BsiHKAI GWGCWC 1 cut(s) 351
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 3 cut(s) 52, 137, 150
Bsp1286I GDGCHC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 53
BspANI GGCC 3 cut(s) 52, 137, 150
BspCNI CTCAG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 581
BspOI GCTAGC 1 cut(s) 300
BspTI CTTAAG 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 2 cut(s) 320, 543
BssECI CCNNGG 3 cut(s) 46, 47, 53
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 390
BstAFI CTTAAG 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 298, 490
BstDEI CTNAG 4 cut(s) 208, 235, 449, 499
BstDSI CCRYGG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 392
BstMWI GCNNNNNNNGC 4 cut(s) 49, 58, 98, 494
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 2 cut(s) 242, 580
BstXI CCANNNNNNTGG 1 cut(s) 54
Bsu36I CCTNAGG 1 cut(s) 499
BsuRI GGCC 3 cut(s) 52, 137, 150
BtgI CCRYGG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 298, 490
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 4 cut(s) 50, 149, 541, 580
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 4 cut(s) 54, 268, 402, 570
DdeI CTNAG 4 cut(s) 208, 235, 449, 499
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 541, 580
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 4 cut(s) 57, 271, 405, 573
FaiI YATR 8 cut(s) 9, 55, 155, 194, 269, 276, 403, 571
FaqI GGGAC 1 cut(s) 593
FatI CATG 4 cut(s) 53, 267, 401, 569
Fnu4HI GCNGC 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 3 cut(s) 12, 203, 297
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 1 cut(s) 329
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 3 cut(s) 52, 137, 150
HhaI GCGC 1 cut(s) 330
Hin1II CATG 4 cut(s) 57, 271, 405, 573
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 531, 544
Hpy188I TCNGA 2 cut(s) 74, 238
Hpy8I GTNNAC 2 cut(s) 531, 544
HpyCH4V TGCA 6 cut(s) 82, 160, 359, 370, 415, 513
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 58, 98, 494
HpyF3I CTNAG 4 cut(s) 208, 235, 449, 499
Hsp92II CATG 4 cut(s) 57, 271, 405, 573
HspAI GCGC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 7 cut(s) 33, 60, 87, 270, 301, 524, 562
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 3 cut(s) 91, 147, 297
MaeI CTAG 3 cut(s) 12, 203, 297
MaeIII GTNAC 1 cut(s) 572
MboII GAAGA 6 cut(s) 26, 238, 242, 404, 407, 580
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 3 cut(s) 277, 420, 428
MluNI TGGCCA 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 2 cut(s) 75, 173
Mox20I TGGCCA 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 1 cut(s) 137
MseI TTAA 3 cut(s) 125, 353, 473
Msp20I TGGCCA 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 49, 58, 98, 494
NcoI CCATGG 1 cut(s) 53
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 4 cut(s) 57, 271, 405, 573
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 572
NsbI TGCGCA 1 cut(s) 329
PasI CCCWGGG 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 406
PflFI GACNNNGTC 2 cut(s) 246, 584
PkrI GCNGC 1 cut(s) 100
PsiI TTATAA 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 581
PspPI GGNCC 4 cut(s) 50, 149, 541, 580
PsyI GACNNNGTC 2 cut(s) 246, 584
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 125, 353, 473
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 4 cut(s) 50, 149, 541, 580
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 3 cut(s) 91, 147, 297
SinI GGWCC 2 cut(s) 541, 580
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 277, 420, 428
SspMI CTAG 3 cut(s) 12, 203, 297
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 53
TaqII GACCGA 1 cut(s) 255
TasI AATT 3 cut(s) 277, 420, 428
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 3 cut(s) 125, 353, 473
Tru9I TTAA 3 cut(s) 125, 353, 473
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 239, 369, 458
TspRI CASTG 1 cut(s) 543
Tth111I GACNNNGTC 2 cut(s) 246, 584
Vha464I CTTAAG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 541, 580
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 3 cut(s) 12, 203, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.