MD14G1096600.v1.1

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000132
Physical Location & Seq
Forward (+)
14680570 .. 14681299
730 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1096600.v1.1.491

Sequence Viewer

Length: 516 bp
ATGCACACTACCAGTACAACTGTTAGGCTACCCCCCGGACCATGGAAGCTGCCTCTCATCGGAAACCTGCACCAAATGGCTGCCAGCTCTTTACCCCATCGCTGCATGGCAGACTTAGCCAACAAGTATGGCCCTATCATGCACCTAAAACTGGGACAACTCTCGGCCATAGTCATTTCATCGCCGGAATTTGTTCAAGAGGTGTTAAAGACGCATGATGTTGCTTTCTCACAACGGCCAACGTTTCTTGCTGCTGAAATCGTGAGCTATAATTGTTCAAGTCTCATATTTTCTCCTTTTAACGATTTTTGGAGACAAATGCGAAAGATTTGTGTGCTGGAGCTCCTAAGTGCAAAACGCGTAGAGTCATTTACATCAATAAGACTAGAAGAGGCATCGAATCTTGTTCAATCAATTTCCTTATCAGAGGGTCACCCGTTCAATCTCAGTGAAATGATCTTCTCCATGGTAAACGTCATTATTGCCCGTGCGGCCTTGGGAAAGAAGTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.21

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 11 - 170 1.3e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccII CGCG 1 cut(s) 360
AciI CCGC 1 cut(s) 491
AclI AACGTT 1 cut(s) 242
AcoI YGGCCR 2 cut(s) 165, 236
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 42, 59, 151
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 4 cut(s) 197, 279, 410, 442
AluBI AGCT 4 cut(s) 49, 87, 267, 343
AluI AGCT 4 cut(s) 49, 87, 267, 343
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 287, 307
AoxI GGCC 4 cut(s) 130, 165, 236, 492
ApeKI GCWGC 4 cut(s) 49, 80, 102, 251
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 38, 131
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 425
AvaII GGWCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 36, 67, 89, 238
BccI CCATC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 287, 307
BfaI CTAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 491
BisI GCNGC 5 cut(s) 50, 81, 103, 252, 492
BlsI GCNGC 5 cut(s) 51, 82, 104, 253, 493
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 38, 131
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 36
BsaJI CCNNGG 4 cut(s) 34, 41, 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 59, 151
Bse1I ACTGG 2 cut(s) 12, 156
BseDI CCNNGG 4 cut(s) 34, 41, 465, 495
BseLI CCNNNNNNNGG 3 cut(s) 42, 59, 151
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 2 cut(s) 12, 156
BseXI GCAGC 4 cut(s) 36, 67, 89, 238
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 4 cut(s) 132, 167, 238, 494
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 36, 185
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 42, 59, 151
BsmAI GTCTC 2 cut(s) 287, 307
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 4 cut(s) 132, 167, 238, 494
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 2 cut(s) 41, 465
BspACI CCGC 1 cut(s) 491
BspANI GGCC 4 cut(s) 132, 167, 238, 494
BspCNI CTCAG 1 cut(s) 459
BspFNI CGCG 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 12, 156
BssECI CCNNGG 4 cut(s) 34, 41, 465, 495
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 3 cut(s) 41, 465, 495
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 115, 347, 446
BstDSI CCRYGG 2 cut(s) 41, 465
BstEII GGTNACC 1 cut(s) 431
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 2 cut(s) 287, 307
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 2 cut(s) 116, 491
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 36, 67, 89, 238
BsuRI GGCC 4 cut(s) 132, 167, 238, 494
BtgI CCRYGG 2 cut(s) 41, 465
BtgZI GCGATG 2 cut(s) 83, 165
BtsIMutI CAGTG 1 cut(s) 454
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 38, 131
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 15
CviAII CATG 5 cut(s) 42, 106, 139, 215, 466
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 3 cut(s) 115, 347, 446
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EaeI YGGCCR 2 cut(s) 165, 236
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 41, 465, 495
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 343
Eco91I GGTNACC 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 431
EcoT14I CCWWGG 3 cut(s) 41, 465, 495
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 3 cut(s) 41, 465, 495
FaeI CATG 5 cut(s) 45, 109, 142, 218, 469
FaiI YATR 9 cut(s) 43, 107, 129, 140, 170, 216, 270, 287, 467
FaqI GGGAC 1 cut(s) 168
FatI CATG 5 cut(s) 41, 105, 138, 214, 465
Fnu4HI GCNGC 5 cut(s) 50, 81, 103, 252, 492
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 5 cut(s) 50, 81, 103, 252, 492
FspBI CTAG 1 cut(s) 386
GluI GCNGC 5 cut(s) 50, 81, 103, 252, 492
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 4 cut(s) 132, 167, 238, 494
HapII CCGG 2 cut(s) 36, 185
HgaI GACGC 1 cut(s) 220
Hin1II CATG 5 cut(s) 45, 109, 142, 218, 469
HinfI GANTC 2 cut(s) 365, 400
HpaII CCGG 2 cut(s) 36, 185
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 62, 427
Hpy188III TCNNGA 2 cut(s) 197, 262
Hpy8I GTNNAC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 242, 474
HpyCH4V TGCA 6 cut(s) 4, 70, 105, 142, 353, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 491
HpyF3I CTNAG 3 cut(s) 115, 347, 446
HpySE526I ACGT 2 cut(s) 242, 474
Hsp92II CATG 5 cut(s) 45, 109, 142, 218, 469
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 340, 348
LpnPI CCDG 7 cut(s) 25, 49, 80, 97, 137, 198, 323
Lsp1109I GCAGC 4 cut(s) 36, 67, 89, 238
LweI GCATC 1 cut(s) 404
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 242, 474
MaeIII GTNAC 1 cut(s) 431
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 2 cut(s) 401, 451
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 188, 271, 414
MluI ACGCGT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 4 cut(s) 63, 193, 385, 421
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 206, 300
MspI CCGG 2 cut(s) 36, 185
MspR9I CCNGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 116, 491
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 2 cut(s) 41, 465
NdeII GATC 1 cut(s) 456
NlaIII CATG 5 cut(s) 45, 109, 142, 218, 469
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 5 cut(s) 51, 82, 104, 253, 493
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 38, 131
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 206, 300
SatI GCNGC 5 cut(s) 50, 81, 103, 252, 492
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 38, 131
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 345
SetI ASST 9 cut(s) 51, 69, 89, 147, 204, 245, 269, 345, 477
SfaNI GCATC 1 cut(s) 404
SinI GGWCC 1 cut(s) 38
Sse9I AATT 3 cut(s) 188, 271, 414
SsiI CCGC 1 cut(s) 491
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 3 cut(s) 41, 465, 495
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 245, 477
TaqI TCGA 1 cut(s) 398
TasI AATT 3 cut(s) 188, 271, 414
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 2 cut(s) 206, 300
Tru9I TTAA 2 cut(s) 206, 300
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 4 cut(s) 49, 80, 102, 251
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.