Rh2CG640000

Premnaspirodiene oxygenase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
81030638 .. 81031099
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG640000.1

Sequence Viewer

Length: 462 bp
ATGTCCCTCTTAATGCTCCAAATACCCTACTTTCCCCTCTTCACTTCTCTCTTGATCCTGGTCATTGTTTGGAAGAAATCCAAAGCCAAATCAGGCCCTAGGAAGTCTCCACCAGGGCCATGGAAGCTGCCTATTATCGGAAACTTGCATCAGTTGGCTACTGGTATTCCACTACCACATCATGCACTGAGAGACTTAGCCAAGAAAAATGGACCTATTATGCACCTAAAACTGGGTCAGGTGGAGGCCGTAATAATCTCTTCCTCCAAAGCTGCAGAAGAGGTGTTGAAGACACATGAGCTCACTTTTGCTCAGAGGCCTCTATTTTTGGCCGCAGAAGTCATGTCTTTGGTCAAGCAAGCATTGTGTTTACTCCTTATGGGGATTTCTGGAGAGAGGTGCGCAAGATTTGTGTTTTCGAACTCTTCAGCCCTAAACGTGTGCAGTCAATTAGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

16.83

Weight (kDa)

9.97

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 107 3.6e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 403
AciI CCGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 411
AfiI CCNNNNNNNGG 2 cut(s) 137, 232
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 2 cut(s) 57, 112
AluBI AGCT 3 cut(s) 127, 272, 301
AluI AGCT 3 cut(s) 127, 272, 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 111, 186
AlwI GGATC 1 cut(s) 49
AoxI GGCC 5 cut(s) 94, 116, 246, 317, 330
ApeKI GCWGC 2 cut(s) 127, 272
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 95, 116, 212
AsuII TTCGAA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 212
AvrII CCTAGG 1 cut(s) 98
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 114, 259
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 59, 114
BcoDI GTCTC 2 cut(s) 111, 186
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 3 cut(s) 128, 273, 333
BlnI CCTAGG 1 cut(s) 98
BlsI GCNGC 3 cut(s) 129, 274, 334
Bme1390I CCNGG 2 cut(s) 59, 114
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 95, 116, 212
BmrFI CCNGG 2 cut(s) 59, 114
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 98, 113, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 232
Bse1I ACTGG 2 cut(s) 166, 237
BseBI CCWGG 2 cut(s) 59, 114
BseCI ATCGAT 1 cut(s) 457
BseDI CCNNGG 3 cut(s) 98, 113, 119
BseLI CCNNNNNNNGG 2 cut(s) 137, 232
BseMII CTCAG 2 cut(s) 179, 326
BseNI ACTGG 2 cut(s) 166, 237
BseXI GCAGC 2 cut(s) 114, 259
BshFI GGCC 5 cut(s) 96, 118, 248, 319, 332
BshVI ATCGAT 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 137, 232
BsmAI GTCTC 2 cut(s) 111, 186
BsnI GGCC 5 cut(s) 96, 118, 248, 319, 332
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 54, 454
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 333
BspANI GGCC 5 cut(s) 96, 118, 248, 319, 332
BspCNI CTCAG 2 cut(s) 180, 325
BspDI ATCGAT 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 419
BsrI ACTGG 2 cut(s) 166, 237
BssECI CCNNGG 3 cut(s) 98, 113, 119
BssMI GATC 2 cut(s) 54, 454
BssT1I CCWWGG 2 cut(s) 98, 119
Bst2UI CCWGG 2 cut(s) 59, 114
Bst6I CTCTTC 4 cut(s) 44, 265, 273, 430
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 188, 196, 312
BstDSI CCRYGG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 2 cut(s) 57, 457
BstMAI GTCTC 2 cut(s) 111, 186
BstMBI GATC 2 cut(s) 54, 454
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 2 cut(s) 59, 114
BstSCI CCNGG 2 cut(s) 57, 112
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 114, 259
BstV2I GAAGAC 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 457
BsuRI GGCC 5 cut(s) 96, 118, 248, 319, 332
BsuTUI ATCGAT 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 95, 116, 212
ClaI ATCGAT 1 cut(s) 457
CviAII CATG 4 cut(s) 120, 182, 296, 343
DdeI CTNAG 3 cut(s) 188, 196, 312
DpnI GATC 2 cut(s) 56, 456
DpnII GATC 2 cut(s) 54, 454
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 4 cut(s) 44, 265, 273, 430
EarI CTCTTC 4 cut(s) 44, 265, 273, 430
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 98, 119
Eco147I AGGCCT 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 57, 112
EcoT14I CCWWGG 2 cut(s) 98, 119
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 2 cut(s) 98, 119
FaeI CATG 4 cut(s) 123, 185, 299, 346
FaiI YATR 6 cut(s) 121, 183, 221, 297, 344, 380
FatI CATG 4 cut(s) 119, 181, 295, 342
Fnu4HI GCNGC 3 cut(s) 128, 273, 333
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 128, 273, 333
FspBI CTAG 1 cut(s) 99
FspI TGCGCA 1 cut(s) 403
GlaI GCGC 1 cut(s) 403
GluI GCNGC 3 cut(s) 128, 273, 333
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 5 cut(s) 96, 118, 248, 319, 332
HhaI GCGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 123, 185, 299, 346
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 2 cut(s) 140, 315
Hpy188III TCNNGA 2 cut(s) 52, 390
Hpy8I GTNNAC 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 5 cut(s) 148, 185, 223, 275, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 188, 196, 312
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 4 cut(s) 123, 185, 299, 346
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 54, 454
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 9 cut(s) 44, 71, 78, 99, 126, 147, 218, 224, 375
Lsp1109I GCAGC 2 cut(s) 114, 259
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 438
MalI GATC 2 cut(s) 56, 456
MboI GATC 2 cut(s) 54, 454
MboII GAAGA 6 cut(s) 31, 85, 252, 290, 301, 417
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 1 cut(s) 449
MnlI CCTC 8 cut(s) 17, 47, 238, 274, 274, 309, 330, 390
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 59, 114
MvaI CCWGG 2 cut(s) 59, 114
MwoI GCNNNNNNNGC 1 cut(s) 124
NcoI CCATGG 1 cut(s) 119
NdeII GATC 2 cut(s) 54, 454
NlaIII CATG 4 cut(s) 123, 185, 299, 346
NsbI TGCGCA 1 cut(s) 403
NspV TTCGAA 1 cut(s) 419
PceI AGGCCT 1 cut(s) 319
PkrI GCNGC 3 cut(s) 129, 274, 334
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 57, 112
PspGI CCWGG 2 cut(s) 57, 112
PspPI GGNCC 3 cut(s) 95, 116, 212
PstI CTGCAG 1 cut(s) 277
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 128, 273, 333
Sau3AI GATC 2 cut(s) 54, 454
Sau96I GGNCC 3 cut(s) 95, 116, 212
ScrFI CCNGG 2 cut(s) 59, 114
SduI GDGCHC 1 cut(s) 303
SetI ASST 9 cut(s) 129, 217, 228, 243, 274, 285, 303, 401, 441
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 1 cut(s) 212
Sse9I AATT 1 cut(s) 449
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 303
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 57, 112
StyI CCWWGG 2 cut(s) 98, 119
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 419, 457
TasI AATT 1 cut(s) 449
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 192
TseI GCWGC 2 cut(s) 127, 272
TspRI CASTG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.