FvH4_6g53570

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000132
Physical Location & Seq
Forward (+)
39241054 .. 39242124
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53570.t1

Sequence Viewer

Length: 846 bp
ATGCACCTCAAACTGGGTCAATTGCAGGCTATTGTGATATCTTCCCCCAAAGCGGCAGAAGAGGTGTTGAAGACTCATGAGCTCACTTTTGCTCAGAGGCCTCGGGTTTTGGCTGTAGAAGTCATGTCTTTCGGTCAAGGCAGCATAGTGTTTGCACCTTATGGTGATTACTGGAGAGAGATACGCAAGATTTGTGTCCTCAAAGTCCTCAACAATAAGCGTGTGCAGTCTTCCGGATTGATAAGAGAAGAAGAGGTATCGAATCTCATCGAGTCCATTTCTTCATCATCAAAGGGATTTACTCCTATCAATTTCAGTGAGAAGATTTTCAGCTTGACAAATGGGATAGTATCAAGGGCAGCGTTTGGAAAAAAGGGCAAAGATCAGAAGGAGTTTACTTCATTGCTTCAAGAAGCAGTAAAACTTGCTGGAGGGTTTGGCATACCTGACTTGTTTCCTTCAATCAGATCTCTTGGTTTCATCACTGGAACTATACCTGCAATGAAGAAGATGAAAAACAAGCTTGGAAAGATTCTTGACAGCATCATCAACGATCATAAGATCAAAACTCAAGGCAATGAGGAAGATTTTGTTGATGTACTTCTCAAACTTCAGGAGTCCATGGAGCTTGATTTAACAACCGATCAGATCAAAGATGTAATGATGGAGTTGCTGAGAAACCCTAGAGCCATGAACAAGGCCCAAGCTGAGCTACGGAAACTCCTCAATGGAAAGCCGAAAGTTGAAGAAGCAGACGTTCAAAACCTGGATTACTTGAAAGCAGTTGTGAAAGAAACTCTGAGGTTGCACCCTCCAGCTCCATTGCACGCTAGAGAGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

282

Amino Acids

31.41

Weight (kDa)

9.39

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 225 1.5e-17 Cytochrome P450
p450 PF00067 220 - 279 1.8e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccIII TCCGGA 1 cut(s) 233
AciI CCGC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 2 cut(s) 13, 52
AgsI TTSAA 6 cut(s) 70, 410, 462, 746, 761, 778
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 7 cut(s) 82, 333, 523, 628, 707, 712, 818
AluI AGCT 7 cut(s) 82, 333, 523, 628, 707, 712, 818
Alw21I GWGCWC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 2 cut(s) 98, 699
ApeKI GCWGC 2 cut(s) 141, 359
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 102
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 77, 222
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 153, 371
BccI CCATC 1 cut(s) 658
BciT130I CCWGG 1 cut(s) 767
BfaI CTAG 2 cut(s) 684, 831
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 505
BglII AGATCT 1 cut(s) 467
BisI GCNGC 3 cut(s) 54, 142, 360
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 3 cut(s) 55, 143, 361
Bme1390I CCNGG 1 cut(s) 767
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 700
BmrFI CCNGG 1 cut(s) 767
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 77, 222
BpmI CTGGAG 3 cut(s) 193, 450, 798
Bpu1102I GCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 101, 621
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 52
Bse1I ACTGG 3 cut(s) 18, 176, 490
Bse3DI GCAATG 4 cut(s) 401, 507, 583, 821
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 2 cut(s) 101, 621
BseLI CCNNNNNNNGG 2 cut(s) 13, 52
BseMI GCAATG 4 cut(s) 401, 507, 583, 821
BseMII CTCAG 4 cut(s) 107, 665, 699, 791
BseNI ACTGG 3 cut(s) 18, 176, 490
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 2 cut(s) 153, 371
BsgI GTGCAG 1 cut(s) 245
BshFI GGCC 2 cut(s) 100, 701
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 13, 52
BsnI GGCC 2 cut(s) 100, 701
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 6 cut(s) 382, 467, 553, 561, 643, 648
Bsp1720I GCTNAGC 1 cut(s) 708
Bsp19I CCATGG 1 cut(s) 621
BspACI CCGC 1 cut(s) 53
BspANI GGCC 2 cut(s) 100, 701
BspCNI CTCAG 4 cut(s) 106, 666, 700, 792
BspEI TCCGGA 1 cut(s) 233
BspHI TCATGA 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 505
BsrDI GCAATG 4 cut(s) 401, 507, 583, 821
BsrI ACTGG 3 cut(s) 18, 176, 490
BssECI CCNNGG 2 cut(s) 101, 621
BssMI GATC 6 cut(s) 382, 467, 553, 561, 643, 648
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 767
Bst6I CTCTTC 2 cut(s) 54, 246
BstC8I GCNNGC 2 cut(s) 27, 828
BstDEI CTNAG 4 cut(s) 93, 674, 708, 800
BstDSI CCRYGG 1 cut(s) 621
BstKTI GATC 6 cut(s) 385, 470, 556, 564, 646, 651
BstMBI GATC 6 cut(s) 382, 467, 553, 561, 643, 648
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 765
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 153, 371
BstV2I GAAGAC 2 cut(s) 77, 222
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 100, 701
BtgI CCRYGG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 322, 483
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 27, 828
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 700
Csp6I GTAC 1 cut(s) 599
CviAII CATG 4 cut(s) 77, 124, 622, 691
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 4 cut(s) 93, 674, 708, 800
DpnI GATC 6 cut(s) 384, 469, 555, 563, 645, 650
DpnII GATC 6 cut(s) 382, 467, 553, 561, 643, 648
Eam1104I CTCTTC 2 cut(s) 54, 246
EarI CTCTTC 2 cut(s) 54, 246
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 765
EcoRV GATATC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 4 cut(s) 80, 127, 625, 694
FaiI YATR 9 cut(s) 78, 125, 146, 162, 443, 494, 558, 623, 692
FatI CATG 4 cut(s) 76, 123, 621, 690
Fnu4HI GCNGC 3 cut(s) 54, 142, 360
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 3 cut(s) 54, 142, 360
FspBI CTAG 2 cut(s) 684, 831
GluI GCNGC 3 cut(s) 54, 142, 360
GsuI CTGGAG 3 cut(s) 193, 450, 798
HaeIII GGCC 2 cut(s) 100, 701
HapII CCGG 1 cut(s) 234
Hin1II CATG 4 cut(s) 80, 127, 625, 694
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 6 cut(s) 73, 262, 272, 532, 617, 836
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 5 cut(s) 96, 387, 467, 648, 801
Hpy188III TCNNGA 5 cut(s) 77, 234, 410, 536, 614
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 382, 468
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 7 cut(s) 4, 25, 155, 226, 500, 808, 826
HpyF3I CTNAG 4 cut(s) 93, 674, 708, 800
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 4 cut(s) 80, 127, 625, 694
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 6 cut(s) 382, 467, 553, 561, 643, 648
LmnI GCTCC 2 cut(s) 625, 823
Lsp1109I GCAGC 2 cut(s) 153, 371
LweI GCATC 1 cut(s) 552
MaeI CTAG 2 cut(s) 684, 831
MaeII ACGT 1 cut(s) 756
MalI GATC 6 cut(s) 384, 469, 555, 563, 645, 650
MboI GATC 6 cut(s) 382, 467, 553, 561, 643, 648
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 20, 310
MlyI GAGTC 4 cut(s) 67, 281, 626, 845
MroI TCCGGA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 1 cut(s) 635
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 767
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 767
NcoI CCATGG 1 cut(s) 621
NdeII GATC 6 cut(s) 382, 467, 553, 561, 643, 648
NlaIII CATG 4 cut(s) 80, 127, 625, 694
PagI TCATGA 1 cut(s) 76
PceI AGGCCT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 262, 532
PkrI GCNGC 3 cut(s) 55, 143, 361
PleI GAGTC 4 cut(s) 67, 280, 625, 844
PpsI GAGTC 4 cut(s) 67, 280, 625, 844
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 765
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 635
SatI GCNGC 3 cut(s) 54, 142, 360
Sau3AI GATC 6 cut(s) 382, 467, 553, 561, 643, 648
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 4 cut(s) 67, 281, 626, 845
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
Sse9I AATT 2 cut(s) 20, 310
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 1 cut(s) 53
SspMI CTAG 2 cut(s) 684, 831
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 765
StyI CCWWGG 1 cut(s) 621
TaiI ACGT 1 cut(s) 759
TaqI TCGA 2 cut(s) 260, 270
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 20, 310
TatI WGTACW 1 cut(s) 598
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 262, 532
Tru1I TTAA 1 cut(s) 635
Tru9I TTAA 1 cut(s) 635
TscAI CASTG 2 cut(s) 322, 490
TseI GCWGC 2 cut(s) 141, 359
TspDTI ATGAA 6 cut(s) 273, 390, 469, 518, 527, 707
TspGWI ACGGA 1 cut(s) 730
TspRI CASTG 2 cut(s) 322, 490
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 684, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.