Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001478.1

Orthogroup ID

OG0000132

Physical Location & Seq

Genomic Coordinates Reverse (-)

19348 .. 19629

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001478.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgtggtccttaatcctccaaacactacccaccaaagctcttcctctttcagcttatctcctcctcttaatcctagtggttcacttttggaagagttccaaattaggcaaaagccaagtcctcaagtcacccccagggccatggaagctgcctattctaggaaatttgcttcaggtggatggtcatccactgccagactacgcattgagagacctagccaagaaatatggacccattatgcacctgaaactaggtcagtcggaggctcaaggccggccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

93

Amino Acids

10.35

Weight (kDa)

10.0

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica	MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica	Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis	pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis	RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata	RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora	Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa	Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha	Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana	Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	38, 53, 148
AluI	AGCT	3 cut(s)	38, 53, 148
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	3 cut(s)	137, 271, 275
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspS9I	GGNCC	4 cut(s)	6, 137, 230, 276
AsuHPI	GGTGA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	6, 230
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	4 cut(s)	74, 158, 215, 251
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	2 cut(s)	6, 230
BmgT120I	GGNCC	4 cut(s)	6, 137, 230, 276
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	107, 252
BsaBI	GATNNNNATC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	133, 134, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	133, 134, 140
BseGI	GGATG	2 cut(s)	184, 184
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	50, 53
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	3 cut(s)	139, 273, 277
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	3 cut(s)	139, 273, 277
Bso31I	GGTCTC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	140
BspANI	GGCC	3 cut(s)	139, 273, 277
BspLI	GGNNCC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	133, 134, 140
BssT1I	CCWWGG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	45, 86
BstC8I	GCNNGC	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	184, 184
BstMAI	GTCTC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	139, 273, 277
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	184, 184
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	4 cut(s)	6, 137, 230, 276
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	9 cut(s)	38, 53, 114, 139, 148, 218, 266, 273, 277
CviKI_1	RGCY	9 cut(s)	38, 53, 114, 139, 148, 218, 266, 273, 277
Eam1104I	CTCTTC	2 cut(s)	45, 86
EarI	CTCTTC	2 cut(s)	45, 86
Eco130I	CCWWGG	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	6, 230
Eco57I	CTGAAG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	144
FaiI	YATR	3 cut(s)	142, 228, 239
FatI	CATG	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	171, 191
FseI	GGCCGGCC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	4 cut(s)	74, 158, 215, 251
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	139, 273, 277
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	1 cut(s)	144
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
LguI	GCTCTTC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	120, 147, 158, 207, 257
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	4 cut(s)	74, 158, 215, 251
MaeIII	GTNAC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	32, 103
MluCI	AATT	2 cut(s)	101, 163
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	26, 54, 71, 74, 131, 256
MroNI	GCCGGC	1 cut(s)	273
MseI	TTAA	2 cut(s)	11, 68
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	145
NaeI	GCCGGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	140
NgoMIV	GCCGGC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	126
PasI	CCCWGGG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	4 cut(s)	6, 137, 230, 276
RigI	GGCCGGCC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	11, 68
SatI	GCNGC	1 cut(s)	149
Sau96I	GGNCC	4 cut(s)	6, 137, 230, 276
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	7 cut(s)	40, 55, 150, 177, 216, 246, 256
SinI	GGWCC	2 cut(s)	6, 230
SmlI	CTYRAG	2 cut(s)	122, 267
SmoI	CTYRAG	2 cut(s)	122, 267
Sse9I	AATT	2 cut(s)	101, 163
SspMI	CTAG	4 cut(s)	74, 158, 215, 251
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	140
TasI	AATT	2 cut(s)	101, 163
Tru1I	TTAA	2 cut(s)	11, 68
Tru9I	TTAA	2 cut(s)	11, 68
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	126
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	6, 230
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	163
XspI	CTAG	4 cut(s)	74, 158, 215, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.