Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

5660223 .. 5663210

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCCCTTCTTCTCCAATATCTACAATGAGCTTTCTCTTGCCTCTATCAGGCCAGTTTATCTCAACCATGTTGACATGCATATTTGGAAAAGGATTGGAGTTGAAGTTTTTTTGGCTCCTTGGCTTTGCACGCTTGGCAAAGGAATGTTCCAACTATGTACCAGTCTCTTCTTTGCAAAAGATATGGTGGCCCCTCAAAGAAGAAGCTTAGAACTCATACCTAATGAGGGCACTCGGAAGATGACCTTTCGGAAGCGAAAGAAGAGTATATATAAAAAGGCCGACGAGCTTTCGAAGCTTTGTGATATTGATGTTTGCTTGATCGTCTATGAAGCCGATCAAAAGAAGGGGAGGGCAGTTCAACCGGAGACGTGGCCGCGAGATCCAACTCAATTCAAACGCATTCTCAACAAGTACAAGGATTCTAAGGATATGCCTGCCCCCGGTTTGAAGAGAAACTTTGATATGTCCGATTTTTATGAGGACAAGAAAGATCACATGGATAACGATGATGAAAAGTTTCAAAATTTAGGGAAGAACCCGACAAAGTTTCAAAATTTAGGGAAGAAGATTTCTGAGGAGGAGTACCCGACATGGAATGATCGAATAGATGATTTTTCGCAGGACGAATTGACTAAGCTCATTGCTTCACTCGAATCTAAGATACAAGTTGCAACCAAGAAGATTGATTCTATGGAAAGATATATGGGGTTTGCTAAGACACAAAATCAAAGTTTGGTCCGGGAAGAGACTAATCATGATGAGCAACCGGCCTATCAAGTCCCTGCTTTGATGTCTCCTCCATCACTTGTGCATTATCCAATGTTGCCAAGTGCATGGGTTTCGAGATCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

286

Amino Acids

33.31

Weight (kDa)

8.47

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	379
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	526, 556
AfaI	GTAC	3 cut(s)	160, 416, 587
AfiI	CCNNNNNNNGG	3 cut(s)	48, 227, 443
AgsI	TTSAA	6 cut(s)	104, 362, 397, 451, 524, 554
AjiI	CACGTC	1 cut(s)	372
AluBI	AGCT	5 cut(s)	31, 207, 289, 298, 640
AluI	AGCT	5 cut(s)	31, 207, 289, 298, 640
Alw26I	GTCTC	4 cut(s)	170, 362, 743, 801
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	5 cut(s)	50, 189, 279, 374, 771
ApoI	RAATTY	2 cut(s)	526, 556
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	190, 739
AsuC2I	CCSGG	2 cut(s)	444, 743
AsuII	TTCGAA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	739
BaeGI	GKGCMC	1 cut(s)	233
BccI	CCATC	1 cut(s)	811
BcgI	CGANNNNNNTGC	1 cut(s)	825
BcnI	CCSGG	2 cut(s)	444, 743
BcoDI	GTCTC	4 cut(s)	170, 362, 743, 801
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	444, 743
Bme18I	GGWCC	1 cut(s)	739
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	190, 739
BmiI	GGNNCC	2 cut(s)	117, 192
BmrFI	CCNGG	2 cut(s)	444, 743
Bpu14I	TTCGAA	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	444, 743
BsaJI	CCNNGG	2 cut(s)	119, 442
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 227, 443
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	2 cut(s)	53, 162
Bse3DI	GCAATG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	119, 442
BseLI	CCNNNNNNNGG	3 cut(s)	48, 227, 443
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	2 cut(s)	53, 162
BseRI	GAGGAG	3 cut(s)	593, 596, 789
BseSI	GKGCMC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	5 cut(s)	52, 191, 281, 376, 773
BsiSI	CCGG	4 cut(s)	365, 444, 742, 770
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	48, 227, 443
BsmAI	GTCTC	4 cut(s)	170, 362, 743, 801
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	5 cut(s)	52, 191, 281, 376, 773
Bsp119I	TTCGAA	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	5 cut(s)	52, 191, 281, 376, 773
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	117, 192
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	53, 162
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	2 cut(s)	119, 442
BssMI	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
BssT1I	CCWWGG	1 cut(s)	119
Bst6I	CTCTTC	4 cut(s)	173, 257, 446, 741
BstBI	TTCGAA	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	131, 438
BstDEI	CTNAG	6 cut(s)	208, 426, 576, 636, 660, 717
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	379
BstKTI	GATC	6 cut(s)	324, 340, 385, 496, 604, 851
BstMAI	GTCTC	4 cut(s)	170, 362, 743, 801
BstMBI	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 135, 295
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	442, 741
BstSLI	GKGCMC	1 cut(s)	233
BstUI	CGCG	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	837
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	5 cut(s)	52, 191, 281, 376, 773
BtrI	CACGTC	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	131, 438
CciI	TCATGA	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	2 cut(s)	190, 739
Csp6I	GTAC	3 cut(s)	159, 415, 586
CviAII	CATG	6 cut(s)	68, 76, 499, 594, 758, 837
CviQI	GTAC	3 cut(s)	159, 415, 586
DdeI	CTNAG	6 cut(s)	208, 426, 576, 636, 660, 717
DpnI	GATC	6 cut(s)	323, 339, 384, 495, 603, 850
DpnII	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	4 cut(s)	173, 257, 446, 741
EarI	CTCTTC	4 cut(s)	173, 257, 446, 741
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	739
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	6 cut(s)	71, 79, 502, 597, 761, 840
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 443, 475
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	6 cut(s)	67, 75, 498, 593, 757, 836
Fnu4HI	GCNGC	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	377
HaeIII	GGCC	5 cut(s)	52, 191, 281, 376, 773
HapII	CCGG	4 cut(s)	365, 444, 742, 770
Hin1II	CATG	6 cut(s)	71, 79, 502, 597, 761, 840
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	205, 296
HinfI	GANTC	3 cut(s)	422, 656, 689
HpaII	CCGG	4 cut(s)	365, 444, 742, 770
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	237, 252, 472, 577, 853
Hpy188III	TCNNGA	2 cut(s)	758, 846
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	16, 340
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	79, 129, 176, 674, 814, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 135, 295
HpyF3I	CTNAG	6 cut(s)	208, 426, 576, 636, 660, 717
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	6 cut(s)	71, 79, 502, 597, 761, 840
Kzo9I	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
LmnI	GCTCC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	371
MalI	GATC	6 cut(s)	323, 339, 384, 495, 603, 850
MboI	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	4 cut(s)	392, 526, 556, 629
MmeI	TCCRAC	2 cut(s)	175, 410
MnlI	CCTC	8 cut(s)	52, 204, 220, 345, 475, 571, 574, 810
Mph1103I	ATGCAT	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	519
MspI	CCGG	4 cut(s)	365, 444, 742, 770
MspR9I	CCNGG	2 cut(s)	444, 743
Mva1269I	GAATGC	1 cut(s)	402
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	130, 135, 295
NciI	CCSGG	2 cut(s)	444, 743
NdeII	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
NlaIII	CATG	6 cut(s)	71, 79, 502, 597, 761, 840
NlaIV	GGNNCC	2 cut(s)	117, 192
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	293
PagI	TCATGA	1 cut(s)	757
PctI	GAATGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	422, 656, 689
PfoI	TCCNGGA	1 cut(s)	741
PkrI	GCNGC	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	117, 192
PspPI	GGNCC	2 cut(s)	190, 739
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	3 cut(s)	160, 416, 587
RsaNI	GTAC	3 cut(s)	159, 415, 586
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	6 cut(s)	321, 337, 382, 493, 601, 848
Sau96I	GGNCC	2 cut(s)	190, 739
ScrFI	CCNGG	2 cut(s)	444, 743
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	8 cut(s)	33, 209, 223, 248, 291, 300, 374, 642
SfuI	TTCGAA	1 cut(s)	293
SinI	GGWCC	1 cut(s)	739
Sse9I	AATT	4 cut(s)	392, 526, 556, 629
SsiI	CCGC	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	442, 741
StyI	CCWWGG	1 cut(s)	119
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	4 cut(s)	293, 604, 654, 845
TasI	AATT	4 cut(s)	392, 526, 556, 629
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	3 cut(s)	422, 656, 689
TspDTI	ATGAA	2 cut(s)	345, 528
VpaK11BI	GGWCC	1 cut(s)	739
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	2 cut(s)	526, 556
XceI	RCATGY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.