MADS
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 30 - 72 | 2.1e-16 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 170 |
| AccBSI | CCGCTC | 1 cut(s) | 866 |
| AciI | CCGC | 4 cut(s) | 701, 734, 866, 940 |
| AclWI | GGATC | 6 cut(s) | 199, 329, 472, 485, 782, 1137 |
| AcsI | RAATTY | 2 cut(s) | 724, 856 |
| AcuI | CTGAAG | 2 cut(s) | 240, 770 |
| AfaI | GTAC | 7 cut(s) | 257, 378, 528, 533, 762, 894, 1094 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 727, 1108 |
| AflII | CTTAAG | 1 cut(s) | 206 |
| AflIII | ACRYGT | 3 cut(s) | 373, 798, 930 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 279 |
| AjiI | CACGTC | 1 cut(s) | 374 |
| AjnI | CCWGG | 2 cut(s) | 473, 600 |
| AluBI | AGCT | 8 cut(s) | 140, 148, 205, 248, 509, 692, 882, 992 |
| AluI | AGCT | 8 cut(s) | 140, 148, 205, 248, 509, 692, 882, 992 |
| Alw26I | GTCTC | 4 cut(s) | 266, 364, 661, 756 |
| AlwI | GGATC | 6 cut(s) | 199, 329, 472, 485, 782, 1137 |
| Ama87I | CYCGRG | 4 cut(s) | 314, 338, 745, 755 |
| AoxI | GGCC | 2 cut(s) | 96, 215 |
| ApoI | RAATTY | 2 cut(s) | 724, 856 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 395, 427 |
| AspA2I | CCTAGG | 1 cut(s) | 407 |
| AspLEI | GCGC | 1 cut(s) | 497 |
| AspS9I | GGNCC | 3 cut(s) | 96, 403, 1111 |
| AsuC2I | CCSGG | 1 cut(s) | 1115 |
| AsuHPI | GGTGA | 1 cut(s) | 272 |
| AvaI | CYCGRG | 4 cut(s) | 314, 338, 745, 755 |
| AvaII | GGWCC | 2 cut(s) | 403, 1111 |
| AvrII | CCTAGG | 1 cut(s) | 407 |
| BamHI | GGATCC | 1 cut(s) | 477 |
| BauI | CACGAG | 1 cut(s) | 305 |
| BbsI | GAAGAC | 1 cut(s) | 906 |
| BccI | CCATC | 1 cut(s) | 556 |
| BciT130I | CCWGG | 2 cut(s) | 475, 602 |
| BciVI | GTATCC | 1 cut(s) | 402 |
| BclI | TGATCA | 1 cut(s) | 108 |
| BcnI | CCSGG | 1 cut(s) | 1115 |
| BcoDI | GTCTC | 4 cut(s) | 266, 364, 661, 756 |
| BfaI | CTAG | 4 cut(s) | 408, 689, 879, 1149 |
| BfmI | CTRYAG | 1 cut(s) | 1030 |
| BfrI | CTTAAG | 1 cut(s) | 206 |
| BfuI | GTATCC | 1 cut(s) | 402 |
| BisI | GCNGC | 1 cut(s) | 940 |
| BlnI | CCTAGG | 1 cut(s) | 407 |
| BlsI | GCNGC | 1 cut(s) | 941 |
| Bme1390I | CCNGG | 3 cut(s) | 475, 602, 1115 |
| Bme18I | GGWCC | 2 cut(s) | 403, 1111 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 279 |
| BmeT110I | CYCGRG | 4 cut(s) | 314, 338, 745, 755 |
| BmgBI | CACGTC | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 403, 1111 |
| BmiI | GGNNCC | 4 cut(s) | 404, 405, 479, 623 |
| BmrFI | CCNGG | 3 cut(s) | 475, 602, 1115 |
| BmrI | ACTGGG | 2 cut(s) | 647, 780 |
| BmsI | GCATC | 3 cut(s) | 721, 972, 1078 |
| BmuI | ACTGGG | 2 cut(s) | 647, 780 |
| BpiI | GAAGAC | 1 cut(s) | 906 |
| Bpu10I | CCTNAGC | 1 cut(s) | 510 |
| BpuMI | CCSGG | 1 cut(s) | 1115 |
| Bsa29I | ATCGAT | 1 cut(s) | 168 |
| BsaI | GGTCTC | 1 cut(s) | 756 |
| BsaJI | CCNNGG | 3 cut(s) | 407, 456, 625 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 727, 1108 |
| Bse1I | ACTGG | 4 cut(s) | 395, 450, 653, 775 |
| BseBI | CCWGG | 2 cut(s) | 475, 602 |
| BseCI | ATCGAT | 1 cut(s) | 168 |
| BseDI | CCNNGG | 3 cut(s) | 407, 456, 625 |
| BseGI | GGATG | 3 cut(s) | 337, 736, 987 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 727, 1108 |
| BseMII | CTCAG | 2 cut(s) | 524, 672 |
| BseNI | ACTGG | 4 cut(s) | 395, 450, 653, 775 |
| BseRI | GAGGAG | 2 cut(s) | 362, 535 |
| BsgI | GTGCAG | 1 cut(s) | 987 |
| BshFI | GGCC | 2 cut(s) | 98, 217 |
| BshVI | ATCGAT | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 4 cut(s) | 314, 338, 745, 755 |
| BsiSI | CCGG | 1 cut(s) | 1114 |
| BslFI | GGGAC | 2 cut(s) | 416, 456 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 727, 1108 |
| BsmAI | GTCTC | 4 cut(s) | 266, 364, 661, 756 |
| BsmBI | CGTCTC | 2 cut(s) | 266, 364 |
| BsmFI | GGGAC | 2 cut(s) | 416, 456 |
| BsnI | GGCC | 2 cut(s) | 98, 217 |
| Bso31I | GGTCTC | 1 cut(s) | 756 |
| BsoBI | CYCGRG | 4 cut(s) | 314, 338, 745, 755 |
| Bsp143I | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| Bsp19I | CCATGG | 1 cut(s) | 625 |
| BspACI | CCGC | 4 cut(s) | 701, 734, 866, 940 |
| BspANI | GGCC | 2 cut(s) | 98, 217 |
| BspCNI | CTCAG | 2 cut(s) | 523, 671 |
| BspDI | ATCGAT | 1 cut(s) | 168 |
| BspLI | GGNNCC | 4 cut(s) | 404, 405, 479, 623 |
| BspPI | GGATC | 6 cut(s) | 199, 329, 472, 485, 782, 1137 |
| BspTI | CTTAAG | 1 cut(s) | 206 |
| BspTNI | GGTCTC | 1 cut(s) | 756 |
| BsrBI | CCGCTC | 1 cut(s) | 866 |
| BsrI | ACTGG | 4 cut(s) | 395, 450, 653, 775 |
| BssECI | CCNNGG | 3 cut(s) | 407, 456, 625 |
| BssMI | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| BssSI | CACGAG | 1 cut(s) | 305 |
| BssT1I | CCWWGG | 3 cut(s) | 407, 456, 625 |
| Bst2BI | CACGAG | 1 cut(s) | 305 |
| Bst2UI | CCWGG | 2 cut(s) | 475, 602 |
| Bst4CI | ACNGT | 7 cut(s) | 127, 260, 531, 635, 846, 965, 1034 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 216 |
| BstAFI | CTTAAG | 1 cut(s) | 206 |
| BstDEI | CTNAG | 2 cut(s) | 510, 658 |
| BstDSI | CCRYGG | 1 cut(s) | 625 |
| BstF5I | GGATG | 3 cut(s) | 337, 736, 987 |
| BstHHI | GCGC | 1 cut(s) | 497 |
| BstKTI | GATC | 7 cut(s) | 111, 194, 301, 337, 480, 777, 1132 |
| BstMAI | GTCTC | 4 cut(s) | 266, 364, 661, 756 |
| BstMBI | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 291 |
| BstNI | CCWGG | 2 cut(s) | 475, 602 |
| BstNSI | RCATGY | 3 cut(s) | 802, 934, 1024 |
| BstSCI | CCNGG | 3 cut(s) | 473, 600, 1113 |
| BstSFI | CTRYAG | 1 cut(s) | 1030 |
| BstV2I | GAAGAC | 1 cut(s) | 906 |
| BstX2I | RGATCY | 1 cut(s) | 477 |
| BstYI | RGATCY | 1 cut(s) | 477 |
| Bsu15I | ATCGAT | 1 cut(s) | 168 |
| BsuI | GTATCC | 1 cut(s) | 402 |
| BsuRI | GGCC | 2 cut(s) | 98, 217 |
| BsuTUI | ATCGAT | 1 cut(s) | 168 |
| BtgI | CCRYGG | 1 cut(s) | 625 |
| BtrI | CACGTC | 1 cut(s) | 374 |
| BtsCI | GGATG | 3 cut(s) | 337, 736, 987 |
| CfoI | GCGC | 1 cut(s) | 497 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 403, 1111 |
| ClaI | ATCGAT | 1 cut(s) | 168 |
| CseI | GACGC | 2 cut(s) | 166, 269 |
| CsiI | ACCWGGT | 1 cut(s) | 600 |
| Csp6I | GTAC | 7 cut(s) | 256, 377, 527, 532, 761, 893, 1093 |
| CviQI | GTAC | 7 cut(s) | 256, 377, 527, 532, 761, 893, 1093 |
| DdeI | CTNAG | 2 cut(s) | 510, 658 |
| DpnI | GATC | 7 cut(s) | 110, 193, 300, 336, 479, 776, 1131 |
| DpnII | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 170 |
| DriI | GACNNNNNGTC | 1 cut(s) | 279 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 170 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 216 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 279 |
| EarI | CTCTTC | 2 cut(s) | 25, 216 |
| EciI | GGCGGA | 1 cut(s) | 690 |
| Eco130I | CCWWGG | 3 cut(s) | 407, 456, 625 |
| Eco31I | GGTCTC | 1 cut(s) | 756 |
| Eco47I | GGWCC | 2 cut(s) | 403, 1111 |
| Eco57I | CTGAAG | 2 cut(s) | 240, 770 |
| Eco88I | CYCGRG | 4 cut(s) | 314, 338, 745, 755 |
| EcoO109I | RGGNCCY | 1 cut(s) | 403 |
| EcoRI | GAATTC | 2 cut(s) | 724, 856 |
| EcoRII | CCWGG | 2 cut(s) | 473, 600 |
| EcoT14I | CCWWGG | 3 cut(s) | 407, 456, 625 |
| EcoT22I | ATGCAT | 1 cut(s) | 1026 |
| ErhI | CCWWGG | 3 cut(s) | 407, 456, 625 |
| Esp3I | CGTCTC | 2 cut(s) | 266, 364 |
| FaqI | GGGAC | 2 cut(s) | 416, 456 |
| FauI | CCCGC | 1 cut(s) | 727 |
| FbaI | TGATCA | 1 cut(s) | 108 |
| Fnu4HI | GCNGC | 1 cut(s) | 940 |
| FokI | GGATG | 3 cut(s) | 344, 743, 994 |
| Fsp4HI | GCNGC | 1 cut(s) | 940 |
| FspBI | CTAG | 4 cut(s) | 408, 689, 879, 1149 |
| GlaI | GCGC | 1 cut(s) | 496 |
| GluI | GCNGC | 1 cut(s) | 940 |
| HaeIII | GGCC | 2 cut(s) | 98, 217 |
| HapII | CCGG | 1 cut(s) | 1114 |
| HgaI | GACGC | 2 cut(s) | 166, 269 |
| HhaI | GCGC | 1 cut(s) | 497 |
| Hin6I | GCGC | 1 cut(s) | 495 |
| HinP1I | GCGC | 1 cut(s) | 495 |
| HincII | GTYRAC | 1 cut(s) | 804 |
| HindII | GTYRAC | 1 cut(s) | 804 |
| HinfI | GANTC | 2 cut(s) | 577, 697 |
| HpaI | GTTAAC | 1 cut(s) | 804 |
| HpaII | CCGG | 1 cut(s) | 1114 |
| HphI | GGTGA | 1 cut(s) | 272 |
| Hpy166II | GTNNAC | 4 cut(s) | 377, 534, 804, 895 |
| Hpy188I | TCNGA | 3 cut(s) | 696, 730, 789 |
| Hpy188III | TCNNGA | 8 cut(s) | 64, 305, 316, 338, 551, 861, 959, 1109 |
| Hpy8I | GTNNAC | 4 cut(s) | 377, 534, 804, 895 |
| Hpy99I | CGWCG | 1 cut(s) | 285 |
| HpyAV | CCTTC | 3 cut(s) | 226, 246, 337 |
| HpyCH4III | ACNGT | 7 cut(s) | 127, 260, 531, 635, 846, 965, 1034 |
| HpyCH4IV | ACGT | 2 cut(s) | 373, 1091 |
| HpyCH4V | TGCA | 4 cut(s) | 968, 985, 1009, 1024 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 291 |
| HpyF3I | CTNAG | 2 cut(s) | 510, 658 |
| HpySE526I | ACGT | 2 cut(s) | 373, 1091 |
| HspAI | GCGC | 1 cut(s) | 495 |
| KflI | GGGWCCC | 1 cut(s) | 403 |
| Ksp22I | TGATCA | 1 cut(s) | 108 |
| KspAI | GTTAAC | 1 cut(s) | 804 |
| Kzo9I | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| LmnI | GCTCC | 3 cut(s) | 430, 697, 989 |
| LweI | GCATC | 3 cut(s) | 721, 972, 1078 |
| MabI | ACCWGGT | 1 cut(s) | 600 |
| MaeI | CTAG | 4 cut(s) | 408, 689, 879, 1149 |
| MaeII | ACGT | 2 cut(s) | 373, 1091 |
| MaeIII | GTNAC | 5 cut(s) | 161, 185, 872, 972, 1034 |
| MalI | GATC | 7 cut(s) | 110, 193, 300, 336, 479, 776, 1131 |
| MbiI | CCGCTC | 1 cut(s) | 866 |
| MboI | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| MflI | RGATCY | 1 cut(s) | 477 |
| MluCI | AATT | 9 cut(s) | 73, 153, 263, 418, 724, 739, 856, 1082, 1123 |
| MmeI | TCCRAC | 2 cut(s) | 505, 1112 |
| MnlI | CCTC | 6 cut(s) | 28, 87, 323, 340, 513, 516 |
| Mph1103I | ATGCAT | 1 cut(s) | 1026 |
| MseI | TTAA | 7 cut(s) | 132, 207, 266, 363, 803, 828, 1050 |
| MslI | CAYNNNNRTG | 4 cut(s) | 539, 797, 1019, 1074 |
| MspCI | CTTAAG | 1 cut(s) | 206 |
| MspI | CCGG | 1 cut(s) | 1114 |
| MspR9I | CCNGG | 3 cut(s) | 475, 602, 1115 |
| MvaI | CCWGG | 2 cut(s) | 475, 602 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 291 |
| NciI | CCSGG | 1 cut(s) | 1115 |
| NcoI | CCATGG | 1 cut(s) | 625 |
| NdeII | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| NlaIV | GGNNCC | 4 cut(s) | 404, 405, 479, 623 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| NsiI | ATGCAT | 1 cut(s) | 1026 |
| NspI | RCATGY | 3 cut(s) | 802, 934, 1024 |
| PaeR7I | CTCGAG | 1 cut(s) | 314 |
| PciI | ACATGT | 2 cut(s) | 798, 930 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 174, 312 |
| PfeI | GAWTC | 2 cut(s) | 577, 697 |
| PkrI | GCNGC | 1 cut(s) | 941 |
| PpuMI | RGGWCCY | 1 cut(s) | 403 |
| PscI | ACATGT | 2 cut(s) | 798, 930 |
| Psp5II | RGGWCCY | 1 cut(s) | 403 |
| Psp6I | CCWGG | 2 cut(s) | 473, 600 |
| PspGI | CCWGG | 2 cut(s) | 473, 600 |
| PspN4I | GGNNCC | 4 cut(s) | 404, 405, 479, 623 |
| PspPI | GGNCC | 3 cut(s) | 96, 403, 1111 |
| PspPPI | RGGWCCY | 1 cut(s) | 403 |
| PsuI | RGATCY | 1 cut(s) | 477 |
| RsaI | GTAC | 7 cut(s) | 257, 378, 528, 533, 762, 894, 1094 |
| RsaNI | GTAC | 7 cut(s) | 256, 377, 527, 532, 761, 893, 1093 |
| RseI | CAYNNNNRTG | 4 cut(s) | 539, 797, 1019, 1074 |
| SaqAI | TTAA | 7 cut(s) | 132, 207, 266, 363, 803, 828, 1050 |
| SatI | GCNGC | 1 cut(s) | 940 |
| Sau3AI | GATC | 7 cut(s) | 108, 191, 298, 334, 477, 774, 1129 |
| Sau96I | GGNCC | 3 cut(s) | 96, 403, 1111 |
| ScrFI | CCNGG | 3 cut(s) | 475, 602, 1115 |
| SexAI | ACCWGGT | 1 cut(s) | 600 |
| SfaNI | GCATC | 3 cut(s) | 721, 972, 1078 |
| SfcI | CTRYAG | 1 cut(s) | 1030 |
| Sfr274I | CTCGAG | 1 cut(s) | 314 |
| SinI | GGWCC | 2 cut(s) | 403, 1111 |
| SlaI | CTCGAG | 1 cut(s) | 314 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 539, 797, 1019, 1074 |
| SmlI | CTYRAG | 2 cut(s) | 206, 314 |
| SmoI | CTYRAG | 2 cut(s) | 206, 314 |
| Sse9I | AATT | 9 cut(s) | 73, 153, 263, 418, 724, 739, 856, 1082, 1123 |
| SsiI | CCGC | 4 cut(s) | 701, 734, 866, 940 |
| SspMI | CTAG | 4 cut(s) | 408, 689, 879, 1149 |
| StyD4I | CCNGG | 3 cut(s) | 473, 600, 1113 |
| StyI | CCWWGG | 3 cut(s) | 407, 456, 625 |
| TaaI | ACNGT | 7 cut(s) | 127, 260, 531, 635, 846, 965, 1034 |
| TaiI | ACGT | 2 cut(s) | 376, 1094 |
| TaqI | TCGA | 5 cut(s) | 41, 92, 168, 250, 315 |
| TasI | AATT | 9 cut(s) | 73, 153, 263, 418, 724, 739, 856, 1082, 1123 |
| TatI | WGTACW | 1 cut(s) | 531 |
| TauI | GCSGC | 1 cut(s) | 942 |
| TfiI | GAWTC | 2 cut(s) | 577, 697 |
| Tru1I | TTAA | 7 cut(s) | 132, 207, 266, 363, 803, 828, 1050 |
| Tru9I | TTAA | 7 cut(s) | 132, 207, 266, 363, 803, 828, 1050 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 4 cut(s) | 338, 590, 809, 1031 |
| TspGWI | ACGGA | 4 cut(s) | 204, 213, 918, 1152 |
| Vha464I | CTTAAG | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 2 cut(s) | 403, 1111 |
| XapI | RAATTY | 2 cut(s) | 724, 856 |
| XceI | RCATGY | 3 cut(s) | 802, 934, 1024 |
| XhoI | CTCGAG | 1 cut(s) | 314 |
| XmaJI | CCTAGG | 1 cut(s) | 407 |
| XspI | CTAG | 4 cut(s) | 408, 689, 879, 1149 |
| Zsp2I | ATGCAT | 1 cut(s) | 1026 |