AT3G18650
MADS Family

MADS

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6417344 .. 6418504
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18650.1

Sequence Viewer

Length: 1161 bp
ATGGCTTCTTCTTCGTCCTCTTCTCTTTCGTTTTCAACATCGAAGAAGAACAAAACCTTTTTCAAGAAACCTAATTCTGCTTTTTCTTCTTCGAGGGCCACAAGTTTGATCAAAAGACAACAGACTGTCTTTAAGAAAGCTAAAGAGCTTTCAATTCTCTGTGACATCGATGTCTGCGTCATCTGTTACGGATCAAACGGAGAGCTTAAGACATGGCCTGAAGAGAGAGAGAAGGTCAAAGCCATAGCTCGAAGGTACGGTGAATTAAGCGAGACGAAGCGTCGCAAAGGAAGCGTTGATCTTCACGAGTTCCTCGAGAAGATGAACAAGGATGATCCCGAGAAGGAGGAGAAGAAGAAGATTAAAGTGAGACGTGTACCCAAAGTCAAGTATCCAGTTTGGGACCCTAGGTTTGACAATTACTCTGTGGAGCAACTCATGGGACTGGTTCAGTCCTTGGAACGAAACCTAACCAGGATCCAACATAGGACTTGCGCTGTTGTTGAAGCTCAGGGGCAGAGGAGGGTACAGTACACGAACATGGCTAATCAAGAACTGATGATGGCTAATACGATGAATCAACTTCAACAACACTCAAACCAGGTTTCCATGTATCTGTGGAACCATGGAAACGGTGCTTTCTCACAAATCCCAGTCTCAGCATTGGCTTCAAACCAAACGCAATCTCTAGCTCCGATTCCGCCTGAACTGATGATTTACCCGAATTCGGATGCGGGAAATTACTCGGGGTCTCTCGGGGTACAAGGAACTGGGATCAATGGGCTTCAGAACATGAACATGTTAACCTATAACAACATCAACAGCGTTAATGATTTCTCAAAACAGTTTGACCAGAATTCCAGAGCGGAAAGTTACTCTAGCTTACTTGGGGTACACGAAGACGGAAACAATGAGTTTGAGAACCCTAACATGTCCAGCCGCAACAACTTCAATGTTCAAGACTGTGCAGGGTTACTTGGGATGCAAGGAGCTGGAACTAACGGGTTGCAGAGCATGAACATGCATGACTACAGTAACAACAACAGCATTAACTCTAATGGTCTTTCGCATCAGTATGTTCAATTTCCAACGTACAACAGCCAACATCAGGACCGGGTTTTCAATTTGGATCAAAACGGAAACAATACTAGGTCTCTCTAA

Protein Analysis

386

Amino Acids

43.55

Weight (kDa)

9.01

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 30 - 72 2.1e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 866
AciI CCGC 4 cut(s) 701, 734, 866, 940
AclWI GGATC 6 cut(s) 199, 329, 472, 485, 782, 1137
AcsI RAATTY 2 cut(s) 724, 856
AcuI CTGAAG 2 cut(s) 240, 770
AfaI GTAC 7 cut(s) 257, 378, 528, 533, 762, 894, 1094
AfiI CCNNNNNNNGG 2 cut(s) 727, 1108
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 3 cut(s) 373, 798, 930
AhdI GACNNNNNGTC 1 cut(s) 279
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 2 cut(s) 473, 600
AluBI AGCT 8 cut(s) 140, 148, 205, 248, 509, 692, 882, 992
AluI AGCT 8 cut(s) 140, 148, 205, 248, 509, 692, 882, 992
Alw26I GTCTC 4 cut(s) 266, 364, 661, 756
AlwI GGATC 6 cut(s) 199, 329, 472, 485, 782, 1137
Ama87I CYCGRG 4 cut(s) 314, 338, 745, 755
AoxI GGCC 2 cut(s) 96, 215
ApoI RAATTY 2 cut(s) 724, 856
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 3 cut(s) 96, 403, 1111
AsuC2I CCSGG 1 cut(s) 1115
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 4 cut(s) 314, 338, 745, 755
AvaII GGWCC 2 cut(s) 403, 1111
AvrII CCTAGG 1 cut(s) 407
BamHI GGATCC 1 cut(s) 477
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 906
BccI CCATC 1 cut(s) 556
BciT130I CCWGG 2 cut(s) 475, 602
BciVI GTATCC 1 cut(s) 402
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 4 cut(s) 266, 364, 661, 756
BfaI CTAG 4 cut(s) 408, 689, 879, 1149
BfmI CTRYAG 1 cut(s) 1030
BfrI CTTAAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 1 cut(s) 940
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 1 cut(s) 941
Bme1390I CCNGG 3 cut(s) 475, 602, 1115
Bme18I GGWCC 2 cut(s) 403, 1111
BmeRI GACNNNNNGTC 1 cut(s) 279
BmeT110I CYCGRG 4 cut(s) 314, 338, 745, 755
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 3 cut(s) 96, 403, 1111
BmiI GGNNCC 4 cut(s) 404, 405, 479, 623
BmrFI CCNGG 3 cut(s) 475, 602, 1115
BmrI ACTGGG 2 cut(s) 647, 780
BmsI GCATC 3 cut(s) 721, 972, 1078
BmuI ACTGGG 2 cut(s) 647, 780
BpiI GAAGAC 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 1115
Bsa29I ATCGAT 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 407, 456, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 727, 1108
Bse1I ACTGG 4 cut(s) 395, 450, 653, 775
BseBI CCWGG 2 cut(s) 475, 602
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 407, 456, 625
BseGI GGATG 3 cut(s) 337, 736, 987
BseLI CCNNNNNNNGG 2 cut(s) 727, 1108
BseMII CTCAG 2 cut(s) 524, 672
BseNI ACTGG 4 cut(s) 395, 450, 653, 775
BseRI GAGGAG 2 cut(s) 362, 535
BsgI GTGCAG 1 cut(s) 987
BshFI GGCC 2 cut(s) 98, 217
BshVI ATCGAT 1 cut(s) 168
BsiHKCI CYCGRG 4 cut(s) 314, 338, 745, 755
BsiSI CCGG 1 cut(s) 1114
BslFI GGGAC 2 cut(s) 416, 456
BslI CCNNNNNNNGG 2 cut(s) 727, 1108
BsmAI GTCTC 4 cut(s) 266, 364, 661, 756
BsmBI CGTCTC 2 cut(s) 266, 364
BsmFI GGGAC 2 cut(s) 416, 456
BsnI GGCC 2 cut(s) 98, 217
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 4 cut(s) 314, 338, 745, 755
Bsp143I GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
Bsp19I CCATGG 1 cut(s) 625
BspACI CCGC 4 cut(s) 701, 734, 866, 940
BspANI GGCC 2 cut(s) 98, 217
BspCNI CTCAG 2 cut(s) 523, 671
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 404, 405, 479, 623
BspPI GGATC 6 cut(s) 199, 329, 472, 485, 782, 1137
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 756
BsrBI CCGCTC 1 cut(s) 866
BsrI ACTGG 4 cut(s) 395, 450, 653, 775
BssECI CCNNGG 3 cut(s) 407, 456, 625
BssMI GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 3 cut(s) 407, 456, 625
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 475, 602
Bst4CI ACNGT 7 cut(s) 127, 260, 531, 635, 846, 965, 1034
Bst6I CTCTTC 2 cut(s) 25, 216
BstAFI CTTAAG 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 510, 658
BstDSI CCRYGG 1 cut(s) 625
BstF5I GGATG 3 cut(s) 337, 736, 987
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 7 cut(s) 111, 194, 301, 337, 480, 777, 1132
BstMAI GTCTC 4 cut(s) 266, 364, 661, 756
BstMBI GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 475, 602
BstNSI RCATGY 3 cut(s) 802, 934, 1024
BstSCI CCNGG 3 cut(s) 473, 600, 1113
BstSFI CTRYAG 1 cut(s) 1030
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 2 cut(s) 98, 217
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 625
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 3 cut(s) 337, 736, 987
CfoI GCGC 1 cut(s) 497
Cfr13I GGNCC 3 cut(s) 96, 403, 1111
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 2 cut(s) 166, 269
CsiI ACCWGGT 1 cut(s) 600
Csp6I GTAC 7 cut(s) 256, 377, 527, 532, 761, 893, 1093
CviQI GTAC 7 cut(s) 256, 377, 527, 532, 761, 893, 1093
DdeI CTNAG 2 cut(s) 510, 658
DpnI GATC 7 cut(s) 110, 193, 300, 336, 479, 776, 1131
DpnII GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
DrdI GACNNNNNNGTC 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 25, 216
Eam1105I GACNNNNNGTC 1 cut(s) 279
EarI CTCTTC 2 cut(s) 25, 216
EciI GGCGGA 1 cut(s) 690
Eco130I CCWWGG 3 cut(s) 407, 456, 625
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 2 cut(s) 403, 1111
Eco57I CTGAAG 2 cut(s) 240, 770
Eco88I CYCGRG 4 cut(s) 314, 338, 745, 755
EcoO109I RGGNCCY 1 cut(s) 403
EcoRI GAATTC 2 cut(s) 724, 856
EcoRII CCWGG 2 cut(s) 473, 600
EcoT14I CCWWGG 3 cut(s) 407, 456, 625
EcoT22I ATGCAT 1 cut(s) 1026
ErhI CCWWGG 3 cut(s) 407, 456, 625
Esp3I CGTCTC 2 cut(s) 266, 364
FaqI GGGAC 2 cut(s) 416, 456
FauI CCCGC 1 cut(s) 727
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 940
FokI GGATG 3 cut(s) 344, 743, 994
Fsp4HI GCNGC 1 cut(s) 940
FspBI CTAG 4 cut(s) 408, 689, 879, 1149
GlaI GCGC 1 cut(s) 496
GluI GCNGC 1 cut(s) 940
HaeIII GGCC 2 cut(s) 98, 217
HapII CCGG 1 cut(s) 1114
HgaI GACGC 2 cut(s) 166, 269
HhaI GCGC 1 cut(s) 497
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HinfI GANTC 2 cut(s) 577, 697
HpaI GTTAAC 1 cut(s) 804
HpaII CCGG 1 cut(s) 1114
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 4 cut(s) 377, 534, 804, 895
Hpy188I TCNGA 3 cut(s) 696, 730, 789
Hpy188III TCNNGA 8 cut(s) 64, 305, 316, 338, 551, 861, 959, 1109
Hpy8I GTNNAC 4 cut(s) 377, 534, 804, 895
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 3 cut(s) 226, 246, 337
HpyCH4III ACNGT 7 cut(s) 127, 260, 531, 635, 846, 965, 1034
HpyCH4IV ACGT 2 cut(s) 373, 1091
HpyCH4V TGCA 4 cut(s) 968, 985, 1009, 1024
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 2 cut(s) 510, 658
HpySE526I ACGT 2 cut(s) 373, 1091
HspAI GCGC 1 cut(s) 495
KflI GGGWCCC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 804
Kzo9I GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
LmnI GCTCC 3 cut(s) 430, 697, 989
LweI GCATC 3 cut(s) 721, 972, 1078
MabI ACCWGGT 1 cut(s) 600
MaeI CTAG 4 cut(s) 408, 689, 879, 1149
MaeII ACGT 2 cut(s) 373, 1091
MaeIII GTNAC 5 cut(s) 161, 185, 872, 972, 1034
MalI GATC 7 cut(s) 110, 193, 300, 336, 479, 776, 1131
MbiI CCGCTC 1 cut(s) 866
MboI GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
MflI RGATCY 1 cut(s) 477
MluCI AATT 9 cut(s) 73, 153, 263, 418, 724, 739, 856, 1082, 1123
MmeI TCCRAC 2 cut(s) 505, 1112
MnlI CCTC 6 cut(s) 28, 87, 323, 340, 513, 516
Mph1103I ATGCAT 1 cut(s) 1026
MseI TTAA 7 cut(s) 132, 207, 266, 363, 803, 828, 1050
MslI CAYNNNNRTG 4 cut(s) 539, 797, 1019, 1074
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 1114
MspR9I CCNGG 3 cut(s) 475, 602, 1115
MvaI CCWGG 2 cut(s) 475, 602
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 1115
NcoI CCATGG 1 cut(s) 625
NdeII GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
NlaIV GGNNCC 4 cut(s) 404, 405, 479, 623
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 1026
NspI RCATGY 3 cut(s) 802, 934, 1024
PaeR7I CTCGAG 1 cut(s) 314
PciI ACATGT 2 cut(s) 798, 930
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 312
PfeI GAWTC 2 cut(s) 577, 697
PkrI GCNGC 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 2 cut(s) 798, 930
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 473, 600
PspGI CCWGG 2 cut(s) 473, 600
PspN4I GGNNCC 4 cut(s) 404, 405, 479, 623
PspPI GGNCC 3 cut(s) 96, 403, 1111
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 1 cut(s) 477
RsaI GTAC 7 cut(s) 257, 378, 528, 533, 762, 894, 1094
RsaNI GTAC 7 cut(s) 256, 377, 527, 532, 761, 893, 1093
RseI CAYNNNNRTG 4 cut(s) 539, 797, 1019, 1074
SaqAI TTAA 7 cut(s) 132, 207, 266, 363, 803, 828, 1050
SatI GCNGC 1 cut(s) 940
Sau3AI GATC 7 cut(s) 108, 191, 298, 334, 477, 774, 1129
Sau96I GGNCC 3 cut(s) 96, 403, 1111
ScrFI CCNGG 3 cut(s) 475, 602, 1115
SexAI ACCWGGT 1 cut(s) 600
SfaNI GCATC 3 cut(s) 721, 972, 1078
SfcI CTRYAG 1 cut(s) 1030
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 2 cut(s) 403, 1111
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 4 cut(s) 539, 797, 1019, 1074
SmlI CTYRAG 2 cut(s) 206, 314
SmoI CTYRAG 2 cut(s) 206, 314
Sse9I AATT 9 cut(s) 73, 153, 263, 418, 724, 739, 856, 1082, 1123
SsiI CCGC 4 cut(s) 701, 734, 866, 940
SspMI CTAG 4 cut(s) 408, 689, 879, 1149
StyD4I CCNGG 3 cut(s) 473, 600, 1113
StyI CCWWGG 3 cut(s) 407, 456, 625
TaaI ACNGT 7 cut(s) 127, 260, 531, 635, 846, 965, 1034
TaiI ACGT 2 cut(s) 376, 1094
TaqI TCGA 5 cut(s) 41, 92, 168, 250, 315
TasI AATT 9 cut(s) 73, 153, 263, 418, 724, 739, 856, 1082, 1123
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 942
TfiI GAWTC 2 cut(s) 577, 697
Tru1I TTAA 7 cut(s) 132, 207, 266, 363, 803, 828, 1050
Tru9I TTAA 7 cut(s) 132, 207, 266, 363, 803, 828, 1050
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 338, 590, 809, 1031
TspGWI ACGGA 4 cut(s) 204, 213, 918, 1152
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 403, 1111
XapI RAATTY 2 cut(s) 724, 856
XceI RCATGY 3 cut(s) 802, 934, 1024
XhoI CTCGAG 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 407
XspI CTAG 4 cut(s) 408, 689, 879, 1149
Zsp2I ATGCAT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.