Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

5529528 .. 5532668

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCTCCTAGAGCTAGAAGAAGCGTAGAACTCATACCAAATGAGATTGCTCGTAAGATGACCTTTCGGAAGCGAAAGAAAAGTATATATAAAAAGGCAGACGAGCTTTCGAAACTCTGTGATATTGATGTTTGCTTGATCATCTATGAAGCTGATCCAAAGAAAGGGAGGGCAATCCAATCAGAGACGTGGCCTCAAGATTCAGCTGAATTCAATGGCATTTTTAACAAGTATAAAGCTTCTAAGGATATTCATGTCCCTGGTTTAAAGCAAAACTTCAATTTGTCTGATTTTTACAACGCAGCCAAGAAAGAAGACGTGGATCGAAAGTTTAAAAAATTGTACCCAACATGGGATGATCGAATCGATGAGTTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

127

Amino Acids

14.85

Weight (kDa)

9.39

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	149, 330
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	164, 352
AgsI	TTSAA	2 cut(s)	214, 280
AjiI	CACGTC	2 cut(s)	189, 319
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	5 cut(s)	14, 106, 152, 206, 239
AluI	AGCT	5 cut(s)	14, 106, 152, 206, 239
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	149, 330
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	9, 15
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	261
BmgBI	CACGTC	2 cut(s)	189, 319
BmrFI	CCNGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 352
BseBI	CCWGG	1 cut(s)	261
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	164, 352
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	164, 352
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	138, 154, 322, 358
BspANI	GGCC	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	366
BspPI	GGATC	2 cut(s)	149, 330
BspT104I	TTCGAA	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	138, 154, 322, 358
Bst2UI	CCWGG	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	4 cut(s)	141, 157, 325, 361
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	4 cut(s)	138, 154, 322, 358
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	193
BsuTUI	ATCGAT	1 cut(s)	366
BtrI	CACGTC	2 cut(s)	189, 319
BtsCI	GGATG	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	254, 351
CviJI	RGCY	7 cut(s)	14, 106, 152, 193, 206, 239, 305
CviKI_1	RGCY	7 cut(s)	14, 106, 152, 193, 206, 239, 305
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	140, 156, 324, 360
DpnII	GATC	4 cut(s)	138, 154, 322, 358
DraI	TTTAAA	2 cut(s)	267, 334
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	257, 354
FaiI	YATR	8 cut(s)	35, 86, 88, 90, 147, 234, 255, 352
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 260, 292
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	253, 350
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	9, 15
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	257, 354
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	200, 363
Hpy188I	TCNGA	3 cut(s)	69, 184, 289
Hpy188III	TCNNGA	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	188, 318
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	188, 318
Hsp92II	CATG	2 cut(s)	257, 354
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	138, 154, 322, 358
LpnPI	CCDG	2 cut(s)	246, 273
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	2 cut(s)	9, 15
MaeII	ACGT	2 cut(s)	188, 318
MalI	GATC	4 cut(s)	140, 156, 324, 360
MboI	GATC	4 cut(s)	138, 154, 322, 358
MboII	GAAGA	2 cut(s)	30, 326
MluCI	AATT	3 cut(s)	209, 280, 338
MnlI	CCTC	3 cut(s)	15, 162, 204
MseI	TTAA	3 cut(s)	225, 266, 333
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NdeII	GATC	4 cut(s)	138, 154, 322, 358
NlaIII	CATG	2 cut(s)	257, 354
NspV	TTCGAA	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	200, 363
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	225, 266, 333
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	4 cut(s)	138, 154, 322, 358
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	8 cut(s)	16, 65, 108, 154, 191, 208, 241, 321
SfuI	TTCGAA	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	3 cut(s)	209, 280, 338
SspMI	CTAG	2 cut(s)	9, 15
StyD4I	CCNGG	1 cut(s)	259
TaiI	ACGT	2 cut(s)	191, 321
TaqI	TCGA	4 cut(s)	110, 325, 361, 366
TasI	AATT	3 cut(s)	209, 280, 338
TfiI	GAWTC	2 cut(s)	200, 363
Tru1I	TTAA	3 cut(s)	225, 266, 333
Tru9I	TTAA	3 cut(s)	225, 266, 333
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	162, 242
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	2 cut(s)	9, 15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.