Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

22548707 .. 22550094

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTCGAAAGATGGTAAAGATGACGAGGATAACGAACGAGAAAACGAGGATAACGACTTACAAGAAGAGGAAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGTGTGGACACTTGTGTCATTGTGTACGGCCCGAGCAGAGCAGGGGACGAAATGGTCATGGAGCCCGAGTTATGGCCAAAGGATGGGAGCAAAGTCCGTGAAATCTTAACCAAGTACAGAGACACTGCGTCAAGCAGCTGCACCAAGACATACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAGGTGGAGAAACCGACGATTGCGACAAAGTATCCTACATGGGACAAAAAGCTCGACCAGTGTTCTTTAAATGACCTCTATGCGGTTTTCATGGCAGTAGAAAACAAGATCCAAGAGGCTACGAATAGGAATCAGACATTTCCTGACACTAGTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTACAATCGGCAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGATTACAACGGGCTCTCTTTCTTCCCTTTTAATAACCAGATGACCTCAAATACTGCGGAAGTGTCTTCCTTCTCGAATGTGACAGAGCCGATGATAGCGAACGGGCAAAGCTTGTTTTACGGGAGTTGTTCGGATGGTCCATATGGTCCGATGGTACAGAGGACAGCTTATATGGAGCCAATACATTGGGGTTTAGGAAACAGTATGTTCAACAATGTGAAGCAGTTCCAAGATTATCCCTTCAGGTTTGCACAAGTTAATGATTTGGAGGATTCAAGTAAACTTTCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

277

Amino Acids

31.7

Weight (kDa)

7.95

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	1.8e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 170
AccB7I	CCANNNNNTGG	1 cut(s)	200
AciI	CCGC	4 cut(s)	117, 386, 486, 596
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	766
AfaI	GTAC	3 cut(s)	143, 233, 696
AfiI	CCNNNNNNNGG	3 cut(s)	189, 200, 385
AgsI	TTSAA	2 cut(s)	751, 816
AhdI	GACNNNNNGTC	1 cut(s)	244
AhlI	ACTAGT	1 cut(s)	452
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	4 cut(s)	255, 355, 651, 707
AluI	AGCT	4 cut(s)	255, 355, 651, 707
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	406
Ama87I	CYCGRG	2 cut(s)	148, 182
AoxI	GGCC	2 cut(s)	145, 191
ApeKI	GCWGC	2 cut(s)	252, 255
Asp700I	GAANNNNTTC	1 cut(s)	764
AspS9I	GGNCC	3 cut(s)	146, 677, 686
AvaI	CYCGRG	2 cut(s)	148, 182
AvaII	GGWCC	2 cut(s)	677, 686
BalI	TGGCCA	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	183, 555
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	242, 264
BccI	CCATC	4 cut(s)	7, 194, 668, 685
BceAI	ACGGC	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	231
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	253, 256
BlsI	GCNGC	2 cut(s)	254, 257
Bme18I	GGWCC	2 cut(s)	677, 686
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	2 cut(s)	148, 182
BmgT120I	GGNCC	3 cut(s)	146, 677, 686
BmiI	GGNNCC	2 cut(s)	180, 717
BpiI	GAAGAC	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 200, 385
Bse1I	ACTGG	2 cut(s)	96, 361
Bse3DI	GCAATG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	205, 679
BseLI	CCNNNNNNNGG	3 cut(s)	189, 200, 385
BseMI	GCAATG	1 cut(s)	506
BseNI	ACTGG	2 cut(s)	96, 361
BseXI	GCAGC	2 cut(s)	242, 264
BsgI	GTGCAG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	147, 193
BsiHKCI	CYCGRG	2 cut(s)	148, 182
BslFI	GGGAC	2 cut(s)	176, 359
BslI	CCNNNNNNNGG	3 cut(s)	189, 200, 385
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	176, 359
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	147, 193
BsoBI	CYCGRG	2 cut(s)	148, 182
Bsp1286I	GDGCHC	2 cut(s)	183, 555
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	4 cut(s)	117, 386, 486, 596
BspANI	GGCC	2 cut(s)	147, 193
BspLI	GGNNCC	2 cut(s)	180, 717
BspPI	GGATC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	506
BsrI	ACTGG	2 cut(s)	96, 361
BssMI	GATC	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	274, 743
Bst6I	CTCTTC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	205, 679
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	242, 264
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	147, 193
BtsCI	GGATG	2 cut(s)	205, 679
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	103, 240, 368
Cfr13I	GGNCC	3 cut(s)	146, 677, 686
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	142, 232, 695
CviAII	CATG	4 cut(s)	78, 175, 342, 394
CviQI	GTAC	3 cut(s)	142, 232, 695
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraI	TTTAAA	1 cut(s)	372
DrdI	GACNNNNNNGTC	2 cut(s)	131, 170
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	2 cut(s)	131, 170
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	62
Eco24I	GRGCYC	2 cut(s)	183, 555
Eco47I	GGWCC	2 cut(s)	677, 686
Eco57I	CTGAAG	1 cut(s)	766
Eco88I	CYCGRG	2 cut(s)	148, 182
EcoT38I	GRGCYC	2 cut(s)	183, 555
FaeI	CATG	4 cut(s)	81, 178, 345, 397
FaqI	GGGAC	2 cut(s)	176, 359
FatI	CATG	4 cut(s)	77, 174, 341, 393
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	253, 256
FokI	GGATG	2 cut(s)	212, 686
FriOI	GRGCYC	2 cut(s)	183, 555
Fsp4HI	GCNGC	2 cut(s)	253, 256
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	2 cut(s)	253, 256
HaeIII	GGCC	2 cut(s)	147, 193
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	81, 178, 345, 397
HindIII	AAGCTT	1 cut(s)	649
HinfI	GANTC	2 cut(s)	433, 812
Hpy166II	GTNNAC	3 cut(s)	124, 142, 821
Hpy188I	TCNGA	3 cut(s)	438, 673, 690
Hpy188III	TCNNGA	2 cut(s)	446, 613
Hpy8I	GTNNAC	3 cut(s)	124, 142, 821
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	619, 790
HpyCH4III	ACNGT	2 cut(s)	274, 743
HpyCH4V	TGCA	3 cut(s)	258, 277, 791
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	81, 178, 345, 397
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	3 cut(s)	178, 204, 715
LpnPI	CCDG	6 cut(s)	109, 144, 374, 459, 590, 769
Lsp1109I	GCAGC	2 cut(s)	242, 264
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	488, 619
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	3 cut(s)	79, 553, 597
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	183, 555
MlsI	TGGCCA	1 cut(s)	193
MluNI	TGGCCA	1 cut(s)	193
MnlI	CCTC	9 cut(s)	21, 42, 63, 389, 412, 537, 595, 693, 802
Mox20I	TGGCCA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	4 cut(s)	224, 371, 570, 798
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	287
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	4 cut(s)	81, 178, 345, 397
NlaIV	GGNNCC	2 cut(s)	180, 717
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 53
PctI	GAATGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	2 cut(s)	433, 812
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	254, 257
PspN4I	GGNNCC	2 cut(s)	180, 717
PspPI	GGNCC	3 cut(s)	146, 677, 686
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	3 cut(s)	143, 233, 696
RsaNI	GTAC	3 cut(s)	142, 232, 695
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	224, 371, 570, 798
SatI	GCNGC	2 cut(s)	253, 256
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	3 cut(s)	146, 677, 686
SduI	GDGCHC	2 cut(s)	183, 555
SetI	ASST	8 cut(s)	257, 309, 357, 381, 587, 653, 709, 788
SinI	GGWCC	2 cut(s)	677, 686
SmiMI	CAYNNNNRTG	1 cut(s)	305
SpeI	ACTAGT	1 cut(s)	452
SsiI	CCGC	4 cut(s)	117, 386, 486, 596
SspMI	CTAG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	274, 743
TaqI	TCGA	3 cut(s)	7, 357, 614
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	433, 812
Tru1I	TTAA	4 cut(s)	224, 371, 570, 798
Tru9I	TTAA	4 cut(s)	224, 371, 570, 798
TscAI	CASTG	3 cut(s)	103, 247, 368
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	2 cut(s)	252, 255
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	103, 247, 368
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	677, 686
XceI	RCATGY	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.