Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

15512943 .. 15514305

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGACGACCATTCGATCTTCACCTTCTTCCTCTCGTTGTTCCAATTCGTCTTCCTCTTCTTCTTATTCACTCGCTTCCACAAGTTTGTCTAACAGACTTGAGACTATATTCAAGAAAGCTTCAGAGCTTTGCACTCTCTGTGATATCGAAGCCTGCGTCATCTATTACGGACCAGACGGAGAACTTAAAACATGGCCTAAGGAGCGAGAGAAAGTGCGAGACATTGCTCTGAGGTTTAATCAATTAAACGAAGCCTTGAGACACAAGAAAAGCGTTAATCTTCATGGGTTCCTGAACAAGAAGAAGAAGAACAAGGGTTTGAAGAATCCGAACAAGAAGAAGAAGACGAGTCTTAAGAACGTGAATGTTTTAAAGTATCCACTCGCTGATCATTACTCTCCCGACCAAGTTTCTCAATTGACTCAGTCCTTAGAACTCAATGTCTCTAAATTCCAAGAAAGGCTTCGATTTCTTGAGTCGCAGAAACAGAATGAGACAAAACCGGATCATCAGAGTTTAACATCAATATCTTCTCTGAACCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAACCATGGATATAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATATCTCAGCGTTACTTGAACAATCTGAGTTGAAGAGTCAGATAATGAAGCAGGAGGTTTGTGGTTATGAGCAGAACATGTGCATGAGTAACCATGGAGATGCTACGCTCTCTCAAATCCCATTCTCTGCATCAAATTTCAATCAAGATTTTTCAGCCAACAACAACTTCCAACATTCTTTTGTCTCAAACACACAAGATTACTACTCTGTTCAAAAATCTGTGAATAACAACTATGGGTTGAAGAATCAGTTAATGAAGCACGATCTTTGTGGTTATGAGCACAACATGTGCATGAGTAACCATGGAGATGCTACCTTCTCTCAAATCCCACTCTCTGCATCAAATTTCAATCAAGATTTTTCAGTCTCAATACAAGAAGAATCTGGCTTGATGCAGCAGGAGCTTTGTGGTTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAATTTTCAAGTTACTTGCGCCTCAGTACTAGAATCTGTGAACAACTTTGGGTTGAATCAGTTGATGCACAAGGAGTTTTATGGTTGTCATCAAAACATGTCTATGGGTAACATCAATAACAACAGCTTTCAACATCCTTGGGTCTCAAACGCAGACCATACTCGGCGGTACAAGAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

426

Amino Acids

48.44

Weight (kDa)

8.19

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	26 - 65	1.1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1264
AclWI	GGATC	2 cut(s)	513, 601
AcsI	RAATTY	4 cut(s)	449, 625, 775, 985
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	1125, 1268
AflII	CTTAAG	1 cut(s)	353
AflIII	ACRYGT	3 cut(s)	717, 927, 1194
AjuI	GAANNNNNNNTTGG	4 cut(s)	447, 479, 791, 823
AluBI	AGCT	4 cut(s)	119, 127, 1045, 1224
AluI	AGCT	4 cut(s)	119, 127, 1045, 1224
Alw21I	GWGCWC	1 cut(s)	924
AlwI	GGATC	2 cut(s)	513, 601
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	1036
ApoI	RAATTY	4 cut(s)	449, 625, 775, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	1118
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	12, 1094
AvaII	GGWCC	1 cut(s)	170
AxyI	CCTNAGG	1 cut(s)	198
BbsI	GAAGAC	2 cut(s)	42, 350
Bbv12I	GWGCWC	1 cut(s)	924
BbvI	GCAGC	1 cut(s)	1048
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	2 cut(s)	388, 1057
BfaI	CTAG	2 cut(s)	555, 1127
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	1 cut(s)	1037
BlsI	GCNGC	1 cut(s)	1038
BmcAI	AGTACT	1 cut(s)	1125
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	7 cut(s)	629, 730, 779, 940, 989, 1023, 1152
BmuI	ACTGGG	1 cut(s)	605
BpiI	GAAGAC	2 cut(s)	42, 350
BpuEI	CTTGAG	3 cut(s)	119, 277, 494
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaI	GGTCTC	1 cut(s)	1246
BsaJI	CCNNGG	4 cut(s)	583, 733, 943, 1235
BsaWI	WCCGGW	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	559, 611
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	1062
BseDI	CCNNGG	4 cut(s)	583, 733, 943, 1235
BseGI	GGATG	1 cut(s)	1231
BseJI	GATNNNNATC	1 cut(s)	1062
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	6 cut(s)	221, 437, 617, 657, 660, 1134
BseNI	ACTGG	2 cut(s)	559, 611
BseXI	GCAGC	1 cut(s)	1048
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	924
BsiSI	CCGG	1 cut(s)	503
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	1246
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp143I	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
Bsp19I	CCATGG	3 cut(s)	583, 733, 943
BspACI	CCGC	1 cut(s)	1264
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	6 cut(s)	222, 436, 616, 658, 659, 1133
BspLI	GGNNCC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	513, 601
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	1246
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	559, 611
BssECI	CCNNGG	4 cut(s)	583, 733, 943, 1235
BssMI	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
BssT1I	CCWWGG	4 cut(s)	583, 733, 943, 1235
Bst6I	CTCTTC	2 cut(s)	61, 668
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	8 cut(s)	198, 230, 423, 430, 603, 646, 666, 1120
BstDSI	CCRYGG	3 cut(s)	583, 733, 943
BstF5I	GGATG	1 cut(s)	1231
BstHHI	GCGC	1 cut(s)	1118
BstKTI	GATC	6 cut(s)	17, 391, 508, 609, 907, 1060
BstMBI	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 1042
BstNSI	RCATGY	3 cut(s)	721, 931, 1198
BstV1I	GCAGC	1 cut(s)	1048
BstV2I	GAAGAC	2 cut(s)	42, 350
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
Bsu36I	CCTNAGG	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	3 cut(s)	583, 733, 943
BtsCI	GGATG	1 cut(s)	1231
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	1 cut(s)	1118
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	1124, 1267
CviQI	GTAC	2 cut(s)	1124, 1267
DdeI	CTNAG	8 cut(s)	198, 230, 423, 430, 603, 646, 666, 1120
DpnI	GATC	6 cut(s)	16, 390, 507, 608, 906, 1059
DpnII	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	61, 668
EarI	CTCTTC	2 cut(s)	61, 668
Eco130I	CCWWGG	4 cut(s)	583, 733, 943, 1235
Eco31I	GGTCTC	1 cut(s)	1246
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	4 cut(s)	583, 733, 943, 1235
ErhI	CCWWGG	4 cut(s)	583, 733, 943, 1235
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FbaI	TGATCA	2 cut(s)	388, 1057
Fnu4HI	GCNGC	1 cut(s)	1037
FokI	GGATG	1 cut(s)	1218
Fsp4HI	GCNGC	1 cut(s)	1037
FspBI	CTAG	2 cut(s)	555, 1127
GlaI	GCGC	1 cut(s)	1117
GluI	GCNGC	1 cut(s)	1037
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	1118
Hin6I	GCGC	1 cut(s)	1116
HinP1I	GCGC	1 cut(s)	1116
HindIII	AAGCTT	1 cut(s)	117
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	12, 1094
Hpy166II	GTNNAC	1 cut(s)	1138
Hpy188III	TCNNGA	7 cut(s)	112, 292, 401, 473, 635, 785, 995
Hpy8I	GTNNAC	1 cut(s)	1138
HpyAV	CCTTC	2 cut(s)	33, 967
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	8 cut(s)	132, 620, 723, 770, 933, 980, 1036, 1165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 1042
HpyF3I	CTNAG	8 cut(s)	198, 230, 423, 430, 603, 646, 666, 1120
HpySE526I	ACGT	1 cut(s)	360
HspAI	GCGC	1 cut(s)	1116
Ksp22I	TGATCA	2 cut(s)	388, 1057
Kzo9I	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
LmnI	GCTCC	2 cut(s)	202, 1042
Lsp1109I	GCAGC	1 cut(s)	1048
LweI	GCATC	7 cut(s)	629, 730, 779, 940, 989, 1023, 1152
MaeI	CTAG	2 cut(s)	555, 1127
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	6 cut(s)	651, 728, 938, 1082, 1108, 1205
MalI	GATC	6 cut(s)	16, 390, 507, 608, 906, 1059
MboI	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	8 cut(s)	43, 242, 416, 449, 625, 775, 985, 1099
MlyI	GAGTC	4 cut(s)	358, 415, 485, 685
MmeI	TCCRAC	1 cut(s)	835
MnlI	CCTC	5 cut(s)	40, 64, 225, 688, 1129
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	8 cut(s)	186, 237, 245, 276, 354, 371, 518, 893
MslI	CAYNNNNRTG	6 cut(s)	722, 738, 932, 948, 1076, 1199
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	503
MunI	CAATTG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	202, 1042
NcoI	CCATGG	3 cut(s)	583, 733, 943
NdeII	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
NlaIV	GGNNCC	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	1240
NmuCI	GTSAC	1 cut(s)	1082
NspI	RCATGY	3 cut(s)	721, 931, 1198
PciI	ACATGT	3 cut(s)	717, 927, 1194
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	7 cut(s)	325, 886, 1022, 1063, 1130, 1153, 1273
PflFI	GACNNNGTC	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	1038
PleI	GAGTC	4 cut(s)	357, 415, 484, 684
PpsI	GAGTC	4 cut(s)	357, 415, 484, 684
PscI	ACATGT	3 cut(s)	717, 927, 1194
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	606
PsyI	GACNNNGTC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	1125, 1268
RsaNI	GTAC	2 cut(s)	1124, 1267
RseI	CAYNNNNRTG	6 cut(s)	722, 738, 932, 948, 1076, 1199
SaqAI	TTAA	8 cut(s)	186, 237, 245, 276, 354, 371, 518, 893
SatI	GCNGC	1 cut(s)	1037
Sau3AI	GATC	6 cut(s)	14, 388, 505, 606, 904, 1057
Sau96I	GGNCC	1 cut(s)	170
ScaI	AGTACT	1 cut(s)	1125
SchI	GAGTC	4 cut(s)	358, 415, 485, 685
SduI	GDGCHC	1 cut(s)	924
SetI	ASST	9 cut(s)	25, 121, 129, 236, 363, 699, 959, 1047, 1226
SfaNI	GCATC	7 cut(s)	629, 730, 779, 940, 989, 1023, 1152
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	6 cut(s)	722, 738, 932, 948, 1076, 1199
SmlI	CTYRAG	4 cut(s)	98, 256, 353, 473
SmoI	CTYRAG	4 cut(s)	98, 256, 353, 473
Sse9I	AATT	8 cut(s)	43, 242, 416, 449, 625, 775, 985, 1099
SsiI	CCGC	1 cut(s)	1264
SspMI	CTAG	2 cut(s)	555, 1127
StyI	CCWWGG	4 cut(s)	583, 733, 943, 1235
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	3 cut(s)	13, 147, 466
TasI	AATT	8 cut(s)	43, 242, 416, 449, 625, 775, 985, 1099
TatI	WGTACW	1 cut(s)	1123
TfiI	GAWTC	7 cut(s)	325, 886, 1022, 1063, 1130, 1153, 1273
Tru1I	TTAA	8 cut(s)	186, 237, 245, 276, 354, 371, 518, 893
Tru9I	TTAA	8 cut(s)	186, 237, 245, 276, 354, 371, 518, 893
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	1 cut(s)	1036
Tsp45I	GTSAC	1 cut(s)	1082
TspDTI	ATGAA	3 cut(s)	272, 701, 911
TspGWI	ACGGA	2 cut(s)	183, 192
Tth111I	GACNNNGTC	1 cut(s)	424
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	4 cut(s)	449, 625, 775, 985
XceI	RCATGY	3 cut(s)	721, 931, 1198
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	555, 1127
ZrmI	AGTACT	1 cut(s)	1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.