Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

36936974 .. 36938253

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG333200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGACCCTCAAAGAAACATACAAGAACTATCGTCCAGTAAGAGTGATCGTAAAAAGGTTCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCAAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCAAAGTACTGTAGCAGAGACTTGGCCCCAAGATCCTGCGCAAGTCAAACGCATTATCACTGGGTACAAGGCAAACCCGGCAATCAGAGATGCTACCATTCCTTCATTGGAGACAAGGGGTTTGGAAGAAACCAAGCCTCGAAAGTCAGATAATGGTCGTGAGAATGTTATTAATAATTCCGATGAGGAGAGGGAGATGTTGTACCCCACATGGGATGATCGATTAGATTACTGTTCTGAGGACGAATTGTTTAGACTGGTTGCTTCCTTGGATGCAAAGCTAGAAGCTTCAACAAAGAGGATTGATTCACTATCGATGAAAAGCTGTAGCGGTTTTGTGACCCCAAAAAACAAAAACAGCAAAGCTGGTGCACTTGATCATCATGACAAGGTGAATTCGAACTTGAAGTCGATCACTTTTCATGAGATTAATGATCTTGATGATCCAAGATCATCCAGAAACTACAGTAGTACTTCAACCATGCAATCAGGAGGTCTCCTTATATGCAATAAGCCGACTGGATTTCATGTTGAGACTCGGACTGGTCAAAAAAATATAGGGCATGGATCTAACCCCTGTACTCGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

245

Amino Acids

27.61

Weight (kDa)

8.81

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	23 - 51	1.7e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	5 cut(s)	72, 127, 173, 584, 721
AcsI	RAATTY	2 cut(s)	76, 541
AfaI	GTAC	5 cut(s)	154, 212, 350, 619, 727
AfiI	CCNNNNNNNGG	2 cut(s)	358, 729
AgsI	TTSAA	4 cut(s)	105, 438, 553, 624
AluBI	AGCT	5 cut(s)	100, 427, 434, 471, 512
AluI	AGCT	5 cut(s)	100, 427, 434, 471, 512
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	4 cut(s)	158, 251, 647, 674
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	5 cut(s)	72, 127, 173, 584, 721
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	516
ApoI	RAATTY	2 cut(s)	76, 541
ArsI	GACNNNNNNTTYG	4 cut(s)	250, 282, 539, 571
AseI	ATTAAT	2 cut(s)	318, 576
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	4, 171
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	4 cut(s)	158, 251, 647, 674
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	3 cut(s)	156, 472, 610
BmcAI	AGTACT	2 cut(s)	154, 619
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 171
BmiI	GGNNCC	2 cut(s)	6, 173
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	226, 409
BmuI	ACTGGG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	224
Bsa29I	ATCGAT	2 cut(s)	367, 461
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	93, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 729
Bse1I	ACTGG	5 cut(s)	36, 211, 408, 670, 694
BseCI	ATCGAT	2 cut(s)	367, 461
BseDI	CCNNGG	2 cut(s)	93, 414
BseGI	GGATG	3 cut(s)	367, 424, 599
BseLI	CCNNNNNNNGG	2 cut(s)	358, 729
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	5 cut(s)	36, 211, 408, 670, 694
BseRI	GAGGAG	2 cut(s)	110, 347
BseSI	GKGCMC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	2 cut(s)	367, 461
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	358, 729
BsmAI	GTCTC	4 cut(s)	158, 251, 647, 674
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	520
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	2 cut(s)	367, 461
BspHI	TCATGA	2 cut(s)	529, 568
BspLI	GGNNCC	2 cut(s)	6, 173
BspPI	GGATC	5 cut(s)	72, 127, 173, 584, 721
BspT104I	TTCGAA	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	647
BsrI	ACTGG	5 cut(s)	36, 211, 408, 670, 694
BssECI	CCNNGG	2 cut(s)	93, 414
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	157, 380, 614
BstBI	TTCGAA	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	367, 424, 599
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	4 cut(s)	158, 251, 647, 674
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	3 cut(s)	156, 472, 610
BstSLI	GKGCMC	1 cut(s)	520
BstX2I	RGATCY	2 cut(s)	178, 713
BstYI	RGATCY	2 cut(s)	178, 713
Bsu15I	ATCGAT	2 cut(s)	367, 461
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	2 cut(s)	367, 461
BtsCI	GGATG	3 cut(s)	367, 424, 599
BtsIMutI	CAGTG	1 cut(s)	204
CciI	TCATGA	2 cut(s)	529, 568
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	4, 171
ClaI	ATCGAT	2 cut(s)	367, 461
Csp6I	GTAC	5 cut(s)	153, 211, 349, 618, 726
CviAII	CATG	6 cut(s)	357, 530, 569, 628, 674, 710
CviJI	RGCY	9 cut(s)	92, 100, 172, 283, 427, 434, 471, 512, 661
CviKI_1	RGCY	9 cut(s)	92, 100, 172, 283, 427, 434, 471, 512, 661
CviQI	GTAC	5 cut(s)	153, 211, 349, 618, 726
DdeI	CTNAG	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	6 cut(s)	360, 533, 572, 631, 677, 713
FatI	CATG	6 cut(s)	356, 529, 568, 627, 673, 709
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	3 cut(s)	374, 431, 586
FspBI	CTAG	1 cut(s)	428
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	6 cut(s)	360, 533, 572, 631, 677, 713
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	2 cut(s)	452, 682
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	6 cut(s)	233, 295, 328, 385, 687, 732
Hpy188III	TCNNGA	8 cut(s)	62, 85, 305, 530, 569, 584, 603, 636
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	157, 380, 614
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	422, 518, 631, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	6 cut(s)	360, 533, 572, 631, 677, 713
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	97
LweI	GCATC	2 cut(s)	226, 409
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	484
MboII	GAAGA	2 cut(s)	85, 284
MflI	RGATCY	2 cut(s)	178, 713
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	4 cut(s)	76, 322, 392, 541
MlyI	GAGTC	1 cut(s)	676
MnlI	CCTC	9 cut(s)	18, 88, 146, 294, 325, 330, 379, 438, 632
MseI	TTAA	4 cut(s)	80, 318, 576, 736
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	224
NlaIII	CATG	6 cut(s)	360, 533, 572, 631, 677, 713
NlaIV	GGNNCC	2 cut(s)	6, 173
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	545
PagI	TCATGA	2 cut(s)	529, 568
PfeI	GAWTC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PshBI	ATTAAT	2 cut(s)	318, 576
PspN4I	GGNNCC	2 cut(s)	6, 173
PspPI	GGNCC	2 cut(s)	4, 171
PsuI	RGATCY	2 cut(s)	178, 713
RsaI	GTAC	5 cut(s)	154, 212, 350, 619, 727
RsaNI	GTAC	5 cut(s)	153, 211, 349, 618, 726
SaqAI	TTAA	4 cut(s)	80, 318, 576, 736
Sau96I	GGNCC	2 cut(s)	4, 171
ScaI	AGTACT	2 cut(s)	154, 619
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	9 cut(s)	60, 102, 148, 429, 436, 473, 514, 540, 643
SfaNI	GCATC	2 cut(s)	226, 409
SfcI	CTRYAG	3 cut(s)	156, 472, 610
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	76, 322, 392, 541
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	157, 380, 614
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	6 cut(s)	67, 286, 367, 461, 545, 557
TasI	AATT	4 cut(s)	76, 322, 392, 541
TatI	WGTACW	3 cut(s)	152, 617, 725
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	4 cut(s)	80, 318, 576, 736
Tru9I	TTAA	4 cut(s)	80, 318, 576, 736
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	240, 479, 557, 662
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	2 cut(s)	318, 576
XapI	RAATTY	2 cut(s)	76, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	428
ZrmI	AGTACT	2 cut(s)	154, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.