Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

34072612 .. 34073355

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACCCTCAAAGAAACATACAAGGACAAGAACTATCGTCCAGTAAGAGTGATCGTAAAAAGGTTCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCAAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCAAAGTACTGTAGCAGAGACTTGGCCCCAAGATCCTGCGCAAGTCAAACGCATTATCACTGGGTACAAGGCAAACCCGGCAATCAGAGATGCTACCATTCCTTCATTGGAGACAAGGGGTTTGGAAGAAACCAAGCCTCGAAAGTCAGATAATGGTCGTGAGAATGTTATTAATAATTCCGATGAGGAGAGGGAGATGTTGTACCCCACATGGGATGATCGATTAGATTACTGTTCTGAGGACGAATTGTTTAGACTGGTTGCTTCCTTGGATGCAAAGCTAGAAGCTTCAACAAAGAGGATTGATTCACTATCGATGAAAAGCTGTAGCGGTTTTGTGACCCCAAAAAACAAAAACAGCAAAGCTGGTGCACTTGATCATCATGACAAGGTGAATTCGAACTTGAACTCGATCACTTTTCATGAGATTAATGATCTTGATGATCCAAGATCATCCAGAAACTACAGTAGTACTTCAACCATGCAATCAGGAGGTCTCCTTATATGCAATAAGCCGACTGGATTTCATGTTGAGACTCGGATTGGTCAAAAAAATTTAGGGCATGGATCTAACCCGTGTACTCGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

8.66

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 53	1.7e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	192
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	5 cut(s)	78, 133, 179, 590, 727
AcsI	RAATTY	3 cut(s)	82, 547, 706
AfaI	GTAC	5 cut(s)	160, 218, 356, 625, 733
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	111, 444, 559, 630
AluBI	AGCT	5 cut(s)	106, 433, 440, 477, 518
AluI	AGCT	5 cut(s)	106, 433, 440, 477, 518
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	4 cut(s)	164, 257, 653, 680
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	5 cut(s)	78, 133, 179, 590, 727
AoxI	GGCC	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	522
ApoI	RAATTY	3 cut(s)	82, 547, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
AseI	ATTAAT	2 cut(s)	324, 582
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	4, 177
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	556
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	4 cut(s)	164, 257, 653, 680
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	3 cut(s)	162, 478, 616
BmcAI	AGTACT	2 cut(s)	160, 625
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 177
BmiI	GGNNCC	2 cut(s)	6, 179
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	232, 415
BmuI	ACTGGG	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	2 cut(s)	373, 467
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	99, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	4 cut(s)	42, 217, 414, 676
BseCI	ATCGAT	2 cut(s)	373, 467
BseDI	CCNNGG	2 cut(s)	99, 420
BseGI	GGATG	3 cut(s)	373, 430, 605
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	4 cut(s)	42, 217, 414, 676
BseRI	GAGGAG	2 cut(s)	116, 353
BseSI	GKGCMC	1 cut(s)	526
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	2 cut(s)	373, 467
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	4 cut(s)	164, 257, 653, 680
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	653
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	526
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	2 cut(s)	373, 467
BspHI	TCATGA	2 cut(s)	535, 574
BspLI	GGNNCC	2 cut(s)	6, 179
BspPI	GGATC	5 cut(s)	78, 133, 179, 590, 727
BspT104I	TTCGAA	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	653
BsrI	ACTGG	4 cut(s)	42, 217, 414, 676
BssECI	CCNNGG	2 cut(s)	99, 420
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	163, 386, 620
BstBI	TTCGAA	1 cut(s)	551
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	373, 430, 605
BstHHI	GCGC	1 cut(s)	193
BstMAI	GTCTC	4 cut(s)	164, 257, 653, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	3 cut(s)	162, 478, 616
BstSLI	GKGCMC	1 cut(s)	526
BstX2I	RGATCY	2 cut(s)	184, 719
BstYI	RGATCY	2 cut(s)	184, 719
Bsu15I	ATCGAT	2 cut(s)	373, 467
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	2 cut(s)	373, 467
BtsCI	GGATG	3 cut(s)	373, 430, 605
BtsIMutI	CAGTG	1 cut(s)	210
CciI	TCATGA	2 cut(s)	535, 574
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	4, 177
ClaI	ATCGAT	2 cut(s)	373, 467
Csp6I	GTAC	5 cut(s)	159, 217, 355, 624, 732
CviAII	CATG	6 cut(s)	363, 536, 575, 634, 680, 716
CviJI	RGCY	9 cut(s)	98, 106, 178, 289, 433, 440, 477, 518, 667
CviKI_1	RGCY	9 cut(s)	98, 106, 178, 289, 433, 440, 477, 518, 667
CviQI	GTAC	5 cut(s)	159, 217, 355, 624, 732
DdeI	CTNAG	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	6 cut(s)	366, 539, 578, 637, 683, 719
FatI	CATG	6 cut(s)	362, 535, 574, 633, 679, 715
FbaI	TGATCA	1 cut(s)	529
FokI	GGATG	3 cut(s)	380, 437, 592
FspBI	CTAG	1 cut(s)	434
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	366, 539, 578, 637, 683, 719
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	2 cut(s)	458, 688
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	2 cut(s)	524, 732
Hpy188I	TCNGA	6 cut(s)	239, 301, 334, 391, 693, 738
Hpy188III	TCNNGA	8 cut(s)	68, 91, 311, 536, 575, 590, 609, 642
Hpy8I	GTNNAC	2 cut(s)	524, 732
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	3 cut(s)	163, 386, 620
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	428, 524, 637, 660
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	6 cut(s)	366, 539, 578, 637, 683, 719
HspAI	GCGC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	55, 198, 201, 243, 395, 504, 622, 627, 657
LweI	GCATC	2 cut(s)	232, 415
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	490
MboII	GAAGA	2 cut(s)	91, 290
MflI	RGATCY	2 cut(s)	184, 719
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	5 cut(s)	82, 328, 398, 547, 706
MlyI	GAGTC	1 cut(s)	682
MnlI	CCTC	9 cut(s)	18, 94, 152, 300, 331, 336, 385, 444, 638
MseI	TTAA	4 cut(s)	86, 324, 582, 742
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	230
NlaIII	CATG	6 cut(s)	366, 539, 578, 637, 683, 719
NlaIV	GGNNCC	2 cut(s)	6, 179
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	551
PagI	TCATGA	2 cut(s)	535, 574
PfeI	GAWTC	1 cut(s)	458
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PshBI	ATTAAT	2 cut(s)	324, 582
PspN4I	GGNNCC	2 cut(s)	6, 179
PspPI	GGNCC	2 cut(s)	4, 177
PsuI	RGATCY	2 cut(s)	184, 719
RsaI	GTAC	5 cut(s)	160, 218, 356, 625, 733
RsaNI	GTAC	5 cut(s)	159, 217, 355, 624, 732
SaqAI	TTAA	4 cut(s)	86, 324, 582, 742
Sau96I	GGNCC	2 cut(s)	4, 177
ScaI	AGTACT	2 cut(s)	160, 625
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	9 cut(s)	66, 108, 154, 435, 442, 479, 520, 546, 649
SfaNI	GCATC	2 cut(s)	232, 415
SfcI	CTRYAG	3 cut(s)	162, 478, 616
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	5 cut(s)	82, 328, 398, 547, 706
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	163, 386, 620
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	6 cut(s)	73, 292, 373, 467, 551, 563
TasI	AATT	5 cut(s)	82, 328, 398, 547, 706
TatI	WGTACW	3 cut(s)	158, 623, 731
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	86, 324, 582, 742
Tru9I	TTAA	4 cut(s)	86, 324, 582, 742
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	4 cut(s)	246, 485, 563, 668
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	2 cut(s)	324, 582
XapI	RAATTY	3 cut(s)	82, 547, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	2 cut(s)	160, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.