Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

26110326 .. 26111403

Gene Structure 1078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGCAAGCTTCTTCTTCTTCTTCGTCACGTAATTCAACAAGTTTAACAAATAGACTTAAAACCATCTTCAAGAAAGCTGAAGAGCTTTCGATTCTCTGTGCTATTGAGGTTTGCGTCATCTATTACGGACCAGACGGTGAACTGAGAACATGGCCTAAGGAGAGAGAGACAGTGAAAGACATGGCTTTGAGGTATAAAGAGGCCAGAAAACGCAAGAAGAGCCGCAATCTTCATGAGTTCCTCGAGAAGGAGAAGGACAAGGACAAGGGGAAGACGAATTTGAAGAAGAATTGGTATCCAAACTTTGATCATTACTCTCCTCAACAACTCTCTCAATTGATTCAGTCCTTAGAACGGACTCTTTCTACTCTGCAAGAAAGGCTTCGTATTGTTGAGGCGCAGAAACTACAGAACACAAACTTGGTGCATCAGAGTTTAACACCATCGTATCTGAACCAGACCCAACACTTGAATCCTAGCAAGTTCTCGCTGTTTATGTACAACCATGGAGATGCTACTCTCTCACAACTCCCACTGTCTGCTCCACACTCCAATCAACTCATCAATTACCAGAATCACTTGATGCAGCATGGTTTTGGTCAGAACATGTGTTCGGACAACATCACCAACAACAACTTTGAACATCCTGGCGTGTCAAACACACAAGACTACTCACCGTTACTTTCGGTACAAGCATCTGCAGTGAATAACTACGGGTTGAATAATCACTTGATGCAGCAACAGGATCAGCTTCATGGTTTTGATCAGAACATGTGTATGGTGAGTGAAATCATCAACAACAACAACGGTCTACAACATCCTAATCTCTCAAACACGGTTCCACATGAATTCTCTTCTGATTTCAACCAGAACCCTTATGGTAATGCGGTCGGTAACATTAGCTTCTCTCAAGACATGTTTTCAAGCTATGATGCGAGCAGTCTGCTACAGACATCTTCTCTGCCACCTCTCCACAACATTCCTAGCAGTTATTGTTTTCCTGGCAACTCAAGACTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

341

Amino Acids

38.89

Weight (kDa)

8.19

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	7 - 52	6.3e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	814
AciI	CCGC	2 cut(s)	226, 890
AclWI	GGATC	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	280, 851
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	503, 693
AfiI	CCNNNNNNNGG	2 cut(s)	250, 357
AflIII	ACRYGT	3 cut(s)	609, 774, 918
AgsI	TTSAA	8 cut(s)	39, 73, 286, 475, 644, 724, 868, 927
AjnI	CCWGG	2 cut(s)	649, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	6 cut(s)	11, 80, 88, 754, 906, 930
AluI	AGCT	6 cut(s)	11, 80, 88, 754, 906, 930
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	756
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	155, 204
ApeKI	GCWGC	2 cut(s)	589, 739
ApoI	RAATTY	2 cut(s)	280, 851
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	4 cut(s)	152, 619, 669, 796
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	434, 467
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	601, 751
BccI	CCATC	2 cut(s)	74, 454
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciT130I	CCWGG	2 cut(s)	651, 1005
BciVI	GTATCC	1 cut(s)	309
BclI	TGATCA	2 cut(s)	310, 766
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	480, 987
BfmI	CTRYAG	3 cut(s)	410, 702, 950
BfuI	GTATCC	1 cut(s)	309
BisI	GCNGC	3 cut(s)	226, 590, 740
BlsI	GCNGC	3 cut(s)	227, 591, 741
Bme1390I	CCNGG	2 cut(s)	651, 1005
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	2 cut(s)	651, 1005
BmsI	GCATC	6 cut(s)	439, 505, 576, 707, 726, 925
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	897, 997
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 357
Bse21I	CCTNAGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	651, 1005
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	646, 820
BseLI	CCNNNNNNNGG	2 cut(s)	250, 357
BseMII	CTCAG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	601, 751
Bsh1285I	CGRYCG	1 cut(s)	894
BshFI	GGCC	2 cut(s)	157, 206
BsiEI	CGRYCG	1 cut(s)	894
BsiHKCI	CYCGRG	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	250, 357
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	157, 206
BsoBI	CYCGRG	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	3 cut(s)	310, 748, 766
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	226, 890
BspANI	GGCC	2 cut(s)	157, 206
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	1 cut(s)	756
BspQI	GCTCTTC	2 cut(s)	78, 215
BsrGI	TGTACA	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	310, 748, 766
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	651, 1005
Bst4CI	ACNGT	6 cut(s)	140, 175, 540, 681, 812, 841
Bst6I	CTCTTC	3 cut(s)	78, 215, 862
BstAUI	TGTACA	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	9, 940
BstDEI	CTNAG	3 cut(s)	146, 159, 352
BstDSI	CCRYGG	1 cut(s)	508
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	646, 820
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	3 cut(s)	313, 751, 769
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	310, 748, 766
BstMCI	CGRYCG	1 cut(s)	894
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 382
BstNI	CCWGG	2 cut(s)	651, 1005
BstNSI	RCATGY	3 cut(s)	613, 778, 922
BstSCI	CCNGG	2 cut(s)	649, 1003
BstSFI	CTRYAG	3 cut(s)	410, 702, 950
BstV1I	GCAGC	2 cut(s)	601, 751
BstV2I	GAAGAC	1 cut(s)	281
Bsu36I	CCTNAGG	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	157, 206
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	646, 820
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	3 cut(s)	180, 536, 711
Cac8I	GCNNGC	2 cut(s)	9, 940
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	502, 692
CviQI	GTAC	2 cut(s)	502, 692
DdeI	CTNAG	3 cut(s)	146, 159, 352
DpnI	GATC	3 cut(s)	312, 750, 768
DpnII	GATC	3 cut(s)	310, 748, 766
Eam1104I	CTCTTC	3 cut(s)	78, 215, 862
EarI	CTCTTC	3 cut(s)	78, 215, 862
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	649, 1003
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FbaI	TGATCA	2 cut(s)	310, 766
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	226, 590, 740
FokI	GGATG	2 cut(s)	633, 807
Fsp4HI	GCNGC	3 cut(s)	226, 590, 740
FspBI	CTAG	2 cut(s)	480, 987
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	226, 590, 740
HaeIII	GGCC	2 cut(s)	157, 206
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	5 cut(s)	94, 343, 361, 475, 577
HphI	GGTGA	4 cut(s)	152, 619, 669, 796
Hpy166II	GTNNAC	2 cut(s)	143, 815
Hpy188I	TCNGA	7 cut(s)	435, 456, 606, 619, 771, 862, 1025
Hpy188III	TCNNGA	5 cut(s)	73, 236, 247, 914, 1014
Hpy8I	GTNNAC	2 cut(s)	143, 815
HpyAV	CCTTC	2 cut(s)	244, 250
HpyCH4III	ACNGT	6 cut(s)	140, 175, 540, 681, 812, 841
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	376, 430, 589, 704, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 382
HpyF3I	CTNAG	3 cut(s)	146, 159, 352
HpySE526I	ACGT	1 cut(s)	31
HspAI	GCGC	1 cut(s)	401
Ksp22I	TGATCA	2 cut(s)	310, 766
Kzo9I	GATC	3 cut(s)	310, 748, 766
LguI	GCTCTTC	2 cut(s)	78, 215
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	2 cut(s)	601, 751
LweI	GCATC	6 cut(s)	439, 505, 576, 707, 726, 925
MaeI	CTAG	2 cut(s)	480, 987
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	3 cut(s)	27, 681, 896
MalI	GATC	3 cut(s)	312, 750, 768
MboI	GATC	3 cut(s)	310, 748, 766
MfeI	CAATTG	1 cut(s)	338
MluCI	AATT	6 cut(s)	34, 280, 292, 338, 568, 851
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	103, 186, 196, 254, 333, 391, 981
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	3 cut(s)	47, 60, 440
MslI	CAYNNNNRTG	2 cut(s)	513, 779
MspR9I	CCNGG	2 cut(s)	651, 1005
MunI	CAATTG	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	651, 1005
MwoI	GCNNNNNNNGC	2 cut(s)	222, 382
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	3 cut(s)	310, 748, 766
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	3 cut(s)	613, 778, 922
PaeR7I	CTCGAG	1 cut(s)	245
PagI	TCATGA	1 cut(s)	235
PciI	ACATGT	3 cut(s)	609, 774, 918
PciSI	GCTCTTC	2 cut(s)	78, 215
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	4 cut(s)	94, 343, 475, 577
PkrI	GCNGC	3 cut(s)	227, 591, 741
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	32
PscI	ACATGT	3 cut(s)	609, 774, 918
Psp6I	CCWGG	2 cut(s)	649, 1003
PspGI	CCWGG	2 cut(s)	649, 1003
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	503, 693
RsaNI	GTAC	2 cut(s)	502, 692
RseI	CAYNNNNRTG	2 cut(s)	513, 779
SapI	GCTCTTC	2 cut(s)	78, 215
SaqAI	TTAA	3 cut(s)	47, 60, 440
SatI	GCNGC	3 cut(s)	226, 590, 740
Sau3AI	GATC	3 cut(s)	310, 748, 766
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	651, 1005
SfaNI	GCATC	6 cut(s)	439, 505, 576, 707, 726, 925
SfcI	CTRYAG	3 cut(s)	410, 702, 950
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	513, 779
SmlI	CTYRAG	3 cut(s)	245, 912, 1012
SmoI	CTYRAG	3 cut(s)	245, 912, 1012
Sse9I	AATT	6 cut(s)	34, 280, 292, 338, 568, 851
SsiI	CCGC	2 cut(s)	226, 890
SspMI	CTAG	2 cut(s)	480, 987
StyD4I	CCNGG	2 cut(s)	649, 1003
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	6 cut(s)	140, 175, 540, 681, 812, 841
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	92, 246
TasI	AATT	6 cut(s)	34, 280, 292, 338, 568, 851
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	4 cut(s)	94, 343, 475, 577
Tru1I	TTAA	3 cut(s)	47, 60, 440
Tru9I	TTAA	3 cut(s)	47, 60, 440
TscAI	CASTG	3 cut(s)	180, 543, 711
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	2 cut(s)	589, 739
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	4 cut(s)	17, 224, 746, 864
TspGWI	ACGGA	2 cut(s)	144, 373
TspRI	CASTG	3 cut(s)	180, 543, 711
VpaK11BI	GGWCC	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	280, 851
XceI	RCATGY	3 cut(s)	613, 778, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	2 cut(s)	480, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.