Rw7G026750

Protein of unknown function (DUF2996)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006674
Physical Location & Seq
Reverse (-)
34068530 .. 34069779
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026750.1

Sequence Viewer

Length: 654 bp
ATGGCTTCGGCTAATATTCTTTCTATGGCCAAACCGTCTCCTCAGGAAAATGGGAAGGGGTTTGCAGAATTCTCAGGTACCCTGCGGAACTCATCAGCTAATTGCCTTCAGTTTGGAAGGAAGAACTCGGACGATTTTGCCTTCCATAGTTCCTCTGCTCAGCATATGGTAAGTAAACCAGTAGCACCTAAAAGAATTATTGCCTGCTCTGCTCTGCAAGAATCTTCTACTTCATCTACTTCCACTGTTGCCGCTGAAACAAAAGACGTGAAAGCAGCTCCAGCAAAGCCTAAAGCTCCTGCAAAAGCTCCAGTCAAGCCGCTACCTCAAATGATGGAAGAGGATATTATCCCATCGCTGAAAGCAATACTCGAAACTCCTCAAAATGAGCTCTCTGATCTTGAACTATTCTTTGAAGACAACAAGCTTGAAGGTTCGTTTCTGAAGAAGGGCAATTCGTACTCATTTTGGGCGTTCTTTCCCAATGGAGTCCTCACAGGTCCAAAAGGGTTTTCTTTATCTTCCTGCGGCTTGGGAGCAAGCACTGTTGAACCTTTTCTTGTCGACGAGAAGAAGATCACGGCAAGACACATTATCTTTTGGGTTGAAAAGCGTTTGGCAGCTCAAGGAATCATTCCTGTGTGGAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2996

Protein Analysis

217

Amino Acids

23.45

Weight (kDa)

8.71

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2996 PF11210 106 - 209 1.3e-12 Protein of unknown function (DUF2996)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 564
AciI CCGC 4 cut(s) 85, 252, 320, 528
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 2 cut(s) 92, 464
AfaI GTAC 2 cut(s) 79, 461
AgsI TTSAA 5 cut(s) 404, 416, 431, 551, 608
AjiI CACGTC 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AluBI AGCT 7 cut(s) 98, 278, 296, 308, 391, 427, 623
AluI AGCT 7 cut(s) 98, 278, 296, 308, 391, 427, 623
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 275, 620
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 555
Asp718I GGTACC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 500
AvaII GGWCC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 42
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 287, 632
BccI CCATC 2 cut(s) 328, 361
BceAI ACGGC 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 42
BisI GCNGC 5 cut(s) 252, 276, 320, 529, 621
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 5 cut(s) 253, 277, 321, 530, 622
Bme18I GGWCC 1 cut(s) 500
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 2 cut(s) 264, 294
Bpu1102I GCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 609
Bse1I ACTGG 2 cut(s) 179, 311
Bse21I CCTNAGG 1 cut(s) 42
BseMII CTCAG 3 cut(s) 56, 87, 173
BseNI ACTGG 2 cut(s) 179, 311
BseRI GAGGAG 2 cut(s) 30, 369
BseXI GCAGC 2 cut(s) 287, 632
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 397, 576
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 4 cut(s) 85, 252, 320, 528
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 55, 86, 172
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 179, 311
BssMI GATC 2 cut(s) 397, 576
Bst4CI ACNGT 3 cut(s) 36, 247, 547
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 205, 541
BstDEI CTNAG 3 cut(s) 42, 73, 159
BstKTI GATC 2 cut(s) 400, 579
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 397, 576
BstMWI GCNNNNNNNGC 2 cut(s) 209, 281
BstV1I GCAGC 2 cut(s) 287, 632
BstV2I GAAGAC 1 cut(s) 423
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 243, 543
Cac8I GCNNGC 2 cut(s) 205, 541
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 78, 460
CviQI GTAC 2 cut(s) 78, 460
DdeI CTNAG 3 cut(s) 42, 73, 159
DpnI GATC 2 cut(s) 399, 578
DpnII GATC 2 cut(s) 397, 576
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 2 cut(s) 92, 464
Eco81I CCTNAGG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 42
FaiI YATR 4 cut(s) 26, 147, 165, 167
FauNDI CATATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 5 cut(s) 252, 276, 320, 529, 621
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 5 cut(s) 252, 276, 320, 529, 621
GluI GCNGC 5 cut(s) 252, 276, 320, 529, 621
GsuI CTGGAG 2 cut(s) 264, 294
HaeIII GGCC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 3 cut(s) 221, 489, 630
Hpy166II GTNNAC 2 cut(s) 176, 565
Hpy188I TCNGA 3 cut(s) 130, 397, 444
Hpy188III TCNNGA 2 cut(s) 44, 401
Hpy8I GTNNAC 2 cut(s) 176, 565
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 6 cut(s) 49, 111, 116, 151, 425, 442
HpyCH4III ACNGT 3 cut(s) 36, 247, 547
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 65, 217, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 281
HpyF3I CTNAG 3 cut(s) 42, 73, 159
HpySE526I ACGT 1 cut(s) 267
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 397, 576
LmnI GCTCC 4 cut(s) 283, 301, 313, 536
Lsp1109I GCAGC 2 cut(s) 287, 632
MaeII ACGT 1 cut(s) 267
MalI GATC 2 cut(s) 399, 578
MboI GATC 2 cut(s) 397, 576
MboII GAAGA 8 cut(s) 133, 216, 350, 428, 457, 513, 583, 586
MhlI GDGCHC 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 4 cut(s) 68, 100, 195, 454
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 6 cut(s) 51, 163, 334, 336, 390, 503
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 555
MscI TGGCCA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 638
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 209, 281
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 397, 576
NlaIV GGNNCC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 221, 630
PkrI GCNGC 5 cut(s) 253, 277, 321, 530, 622
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 500
RsaI GTAC 2 cut(s) 79, 461
RsaNI GTAC 2 cut(s) 78, 460
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 393
SalI GTCGAC 1 cut(s) 563
SatI GCNGC 5 cut(s) 252, 276, 320, 529, 621
Sau3AI GATC 2 cut(s) 397, 576
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 498
SduI GDGCHC 1 cut(s) 393
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 4 cut(s) 68, 100, 195, 454
SsiI CCGC 4 cut(s) 85, 252, 320, 528
SspI AATATT 1 cut(s) 16
SstI GAGCTC 1 cut(s) 393
TaaI ACNGT 3 cut(s) 36, 247, 547
TaiI ACGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 372, 564
TasI AATT 4 cut(s) 68, 100, 195, 454
TauI GCSGC 3 cut(s) 254, 322, 531
TfiI GAWTC 2 cut(s) 221, 630
TscAI CASTG 2 cut(s) 250, 550
TseI GCWGC 2 cut(s) 275, 620
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 2 cut(s) 250, 550
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.