Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240835.1

Orthogroup ID

OG0017412

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 736

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ctaaaaagagttgtcaagaatggctcgggtgcaaatccgttgtcaagaagttacaaaaggagtttcaatggatttgctgtgaagctcactgaccttgaaagacaaaagattgctaacaggaacgaggtggtctctgtctttccaagcacaactttccgacttcaaacaacaagattgtgggacttcaacggtcaaaatgagaaaatccatcgaaatgccacagtagtgattggtgtccttgacacaggaatctggcccgaatcgggtagcttcaaaaatgaaggtttcagtccggctccaagcagtggaaaggtgcttgtgcaggtggaaaaaacttcacttgcaacaacaagatcagcagtgtacctcaacagcagcagggaacgccctaaaggactagtacaaggtgctacaagaggtggagttccctttgcgagaattgctgcatataaagtctgcaatggcgaatggtgccgttcagaggatccgatagcaataggtgcttttcatgcaactgagaaagggatactaacaactaaaactgcaggcaacgatggttatagagctggttctgtaacaaagtgtggcaccatggttgctaactacagttgcagcaagagatcgtcggataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

211

Amino Acids

22.9

Weight (kDa)

10.02

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017412)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323441 RchiOBHm_Chr1g0324021 RchiOBHm_Chr6g0255051
rosa_laevigata	RLG00000014858
rosa_multiflora	Rmu_co8240835.1_g000001 Rmu_sc0003745.1_g000003 Rmu_ssc0000011.1_g000077
rosa_roxburghii	Rroxscaffold_4G00326540
rosa_rugosa	Rorug05G0556500
rosa_samantha	Rh1AG059500 Rh1DG061400 Rh6AG073800 Rh6BG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	2 cut(s)	471, 587
AccB7I	CCANNNNNTGG	1 cut(s)	305
AclWI	GGATC	2 cut(s)	479, 492
AfaI	GTAC	2 cut(s)	365, 402
AfiI	CCNNNNNNNGG	3 cut(s)	263, 305, 481
AgsI	TTSAA	5 cut(s)	67, 98, 164, 187, 274
AhlI	ACTAGT	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	85, 270, 566
AluI	AGCT	3 cut(s)	85, 270, 566
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	479, 492
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	375, 443, 612
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspS9I	GGNCC	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	484
BanI	GGYRCC	2 cut(s)	471, 587
BbvI	GCAGC	3 cut(s)	387, 430, 624
BccI	CCATC	2 cut(s)	216, 548
BceAI	ACGGC	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	543, 604
BfuAI	ACCTGC	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	3 cut(s)	376, 444, 613
BlsI	GCNGC	3 cut(s)	377, 445, 614
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	4 cut(s)	297, 473, 486, 589
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 305, 481
Bse3DI	GCAATG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	263, 305, 481
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	507
BseXI	GCAGC	3 cut(s)	387, 430, 624
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	2 cut(s)	471, 587
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	263, 305, 481
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	353, 484, 620
Bsp19I	CCATGG	1 cut(s)	591
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	297, 473, 486, 589
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	479, 492
BspT107I	GGYRCC	2 cut(s)	471, 587
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	353, 484, 620
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	191, 223, 608
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	591
BstKTI	GATC	3 cut(s)	356, 487, 623
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	353, 484, 620
BstMWI	GCNNNNNNNGC	5 cut(s)	384, 440, 471, 500, 509
BstSFI	CTRYAG	2 cut(s)	543, 604
BstV1I	GCAGC	3 cut(s)	387, 430, 624
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	591
BtsI	GCAGTG	2 cut(s)	310, 366
BtsIMutI	CAGTG	3 cut(s)	87, 310, 366
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	364, 401
CviAII	CATG	2 cut(s)	509, 592
CviJI	RGCY	6 cut(s)	24, 85, 256, 270, 296, 566
CviKI_1	RGCY	6 cut(s)	24, 85, 256, 270, 296, 566
CviQI	GTAC	2 cut(s)	364, 401
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	3 cut(s)	355, 486, 622
DpnII	GATC	3 cut(s)	353, 484, 620
Eco130I	CCWWGG	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	512, 595
FaiI	YATR	5 cut(s)	448, 450, 510, 561, 593
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	508, 591
Fnu4HI	GCNGC	3 cut(s)	376, 444, 613
Fsp4HI	GCNGC	3 cut(s)	376, 444, 613
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	3 cut(s)	376, 444, 613
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	2 cut(s)	512, 595
HinfI	GANTC	2 cut(s)	249, 260
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	158, 481, 489, 628
Hpy188III	TCNNGA	2 cut(s)	16, 45
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	191, 223, 608
HpyCH4V	TGCA	8 cut(s)	32, 322, 344, 446, 459, 512, 545, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	384, 440, 471, 500, 509
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	512, 595
Kzo9I	GATC	3 cut(s)	353, 484, 620
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	103, 231, 238, 306, 308, 364, 531, 552
Lsp1109I	GCAGC	3 cut(s)	387, 430, 624
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	50, 574
MalI	GATC	3 cut(s)	355, 486, 622
MboI	GATC	3 cut(s)	353, 484, 620
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	2 cut(s)	438, 631
MmeI	TCCRAC	2 cut(s)	181, 606
MnlI	CCTC	4 cut(s)	118, 377, 410, 475
MslI	CAYNNNNRTG	2 cut(s)	213, 224
MspI	CCGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	5 cut(s)	384, 440, 471, 500, 509
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	3 cut(s)	353, 484, 620
NlaIII	CATG	2 cut(s)	512, 595
NlaIV	GGNNCC	4 cut(s)	297, 473, 486, 589
OliI	CACNNNNGTG	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	249, 260
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	377, 445, 614
PspN4I	GGNNCC	4 cut(s)	297, 473, 486, 589
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	2 cut(s)	365, 402
RsaNI	GTAC	2 cut(s)	364, 401
RseI	CAYNNNNRTG	2 cut(s)	213, 224
SatI	GCNGC	3 cut(s)	376, 444, 613
Sau3AI	GATC	3 cut(s)	353, 484, 620
Sau96I	GGNCC	1 cut(s)	255
SfcI	CTRYAG	2 cut(s)	543, 604
SmiMI	CAYNNNNRTG	2 cut(s)	213, 224
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	2 cut(s)	438, 631
SspMI	CTAG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	191, 223, 608
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	438, 631
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	249, 260
TscAI	CASTG	3 cut(s)	94, 310, 366
TseI	GCWGC	3 cut(s)	375, 443, 612
TspDTI	ATGAA	2 cut(s)	294, 497
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	94, 310, 366
Van91I	CCANNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.