Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000011.1

Orthogroup ID

OG0017412

Physical Location & Seq

Genomic Coordinates Reverse (-)

317740 .. 318562

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000011.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgaaaacagaaaggtccagagtgtacctcggctcacttccagataataataagtggtacttaccattgtctcaccacctttgtattctaaaaagagttgtcaagaatggctcgggtgcaaatccgttgtcaagaagttacaaaaggagtttcaatggatttgctgtgaagctcactgaccttgaaagacaaaagattgctaacaggaacgaggtggtctctgtctttccaagcacaactttccgacttcaaacaacaagattgtgggacttcaacggtcaaaatgagaaaatccatcgaaatgccacagtagtgattggtgtccttgacacaggaatctggcccgaatcgggtagcttcaaaaatgaaggtttcagtccggctccaagcagtggaaaggtgcttgtgcaggtggaaaaaacttcacttgcaacaacaagatcagcagtgtacctcaacagcagcagggaacgccctaaaggactagtacaaggtgctacaagaggtggagttccctttgcgagaattgctgcatataaagtctgcaatggcgaatggtgccgttcagaggatccgatagcaataggtgcttttcatgcaactgagaaagggatactaacaactaaaactgcaggcaacgatggttatagagctggttctgtaacaaagtgtggcaccatggttgctaactacagttgcagcaagagatcgtcggataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

240

Amino Acids

26.35

Weight (kDa)

9.95

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017412)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323441 RchiOBHm_Chr1g0324021 RchiOBHm_Chr6g0255051
rosa_laevigata	RLG00000014858
rosa_multiflora	Rmu_co8240835.1_g000001 Rmu_sc0003745.1_g000003 Rmu_ssc0000011.1_g000077
rosa_roxburghii	Rroxscaffold_4G00326540
rosa_rugosa	Rorug05G0556500
rosa_samantha	Rh1AG059500 Rh1DG061400 Rh6AG073800 Rh6BG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	2 cut(s)	558, 674
AccB7I	CCANNNNNTGG	1 cut(s)	392
AclWI	GGATC	2 cut(s)	566, 579
AfaI	GTAC	4 cut(s)	26, 59, 452, 489
AfiI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
AgsI	TTSAA	5 cut(s)	154, 185, 251, 274, 361
AhlI	ACTAGT	1 cut(s)	484
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	3 cut(s)	172, 357, 653
AluI	AGCT	3 cut(s)	172, 357, 653
Alw26I	GTCTC	2 cut(s)	75, 223
AlwI	GGATC	2 cut(s)	566, 579
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	462, 530, 699
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	2 cut(s)	15, 342
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	2 cut(s)	558, 674
BbvI	GCAGC	3 cut(s)	474, 517, 711
BccI	CCATC	2 cut(s)	303, 635
BceAI	ACGGC	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	75, 223
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	2 cut(s)	630, 691
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	3 cut(s)	463, 531, 700
BlsI	GCNGC	3 cut(s)	464, 532, 701
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	15, 342
BmiI	GGNNCC	4 cut(s)	384, 560, 573, 676
BplI	GAGNNNNNCTC	4 cut(s)	12, 44, 203, 235
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	28, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 392, 568
Bse3DI	GCAATG	1 cut(s)	553
BseDI	CCNNGG	2 cut(s)	28, 678
BseLI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	594
BseXI	GCAGC	3 cut(s)	474, 517, 711
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	2 cut(s)	558, 674
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
BsmAI	GTCTC	2 cut(s)	75, 223
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	440, 571, 707
Bsp19I	CCATGG	1 cut(s)	678
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	384, 560, 573, 676
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	2 cut(s)	566, 579
BspT107I	GGYRCC	2 cut(s)	558, 674
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	28, 678
BssMI	GATC	3 cut(s)	440, 571, 707
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	278, 310, 695
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	678
BstKTI	GATC	3 cut(s)	443, 574, 710
BstMAI	GTCTC	2 cut(s)	75, 223
BstMBI	GATC	3 cut(s)	440, 571, 707
BstMWI	GCNNNNNNNGC	5 cut(s)	471, 527, 558, 587, 596
BstSFI	CTRYAG	2 cut(s)	630, 691
BstV1I	GCAGC	3 cut(s)	474, 517, 711
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	678
BtsI	GCAGTG	2 cut(s)	397, 453
BtsIMutI	CAGTG	3 cut(s)	174, 397, 453
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	15, 342
Csp6I	GTAC	4 cut(s)	25, 58, 451, 488
CviAII	CATG	2 cut(s)	596, 679
CviJI	RGCY	7 cut(s)	33, 111, 172, 343, 357, 383, 653
CviKI_1	RGCY	7 cut(s)	33, 111, 172, 343, 357, 383, 653
CviQI	GTAC	4 cut(s)	25, 58, 451, 488
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	3 cut(s)	442, 573, 709
DpnII	GATC	3 cut(s)	440, 571, 707
Eco130I	CCWWGG	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	2 cut(s)	599, 682
FaiI	YATR	5 cut(s)	535, 537, 597, 648, 680
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 223, 255
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	595, 678
Fnu4HI	GCNGC	3 cut(s)	463, 531, 700
Fsp4HI	GCNGC	3 cut(s)	463, 531, 700
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	3 cut(s)	463, 531, 700
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	2 cut(s)	599, 682
HinfI	GANTC	2 cut(s)	336, 347
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	25, 451
Hpy188I	TCNGA	4 cut(s)	245, 568, 576, 715
Hpy188III	TCNNGA	4 cut(s)	18, 41, 103, 132
Hpy8I	GTNNAC	2 cut(s)	25, 451
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	3 cut(s)	278, 310, 695
HpyCH4V	TGCA	8 cut(s)	119, 409, 431, 533, 546, 599, 632, 699
HpyF10VI	GCNNNNNNNGC	5 cut(s)	471, 527, 558, 587, 596
HpyF3I	CTNAG	1 cut(s)	603
Hsp92II	CATG	2 cut(s)	599, 682
Kzo9I	GATC	3 cut(s)	440, 571, 707
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	474, 517, 711
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	137, 661
MalI	GATC	3 cut(s)	442, 573, 709
MboI	GATC	3 cut(s)	440, 571, 707
MflI	RGATCY	1 cut(s)	571
MluCI	AATT	2 cut(s)	525, 718
MmeI	TCCRAC	2 cut(s)	268, 693
MnlI	CCTC	5 cut(s)	38, 205, 464, 497, 562
MslI	CAYNNNNRTG	2 cut(s)	300, 311
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	5 cut(s)	471, 527, 558, 587, 596
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	440, 571, 707
NlaIII	CATG	2 cut(s)	599, 682
NlaIV	GGNNCC	4 cut(s)	384, 560, 573, 676
NmeAIII	GCCGAG	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	336, 347
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	464, 532, 701
PspN4I	GGNNCC	4 cut(s)	384, 560, 573, 676
PspPI	GGNCC	2 cut(s)	15, 342
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	4 cut(s)	26, 59, 452, 489
RsaNI	GTAC	4 cut(s)	25, 58, 451, 488
RseI	CAYNNNNRTG	2 cut(s)	300, 311
SatI	GCNGC	3 cut(s)	463, 531, 700
Sau3AI	GATC	3 cut(s)	440, 571, 707
Sau96I	GGNCC	2 cut(s)	15, 342
SfcI	CTRYAG	2 cut(s)	630, 691
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	300, 311
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	2 cut(s)	525, 718
SspMI	CTAG	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	3 cut(s)	278, 310, 695
TaqI	TCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	525, 718
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	336, 347
TscAI	CASTG	3 cut(s)	181, 397, 453
TseI	GCWGC	3 cut(s)	462, 530, 699
TspDTI	ATGAA	3 cut(s)	17, 381, 584
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	3 cut(s)	181, 397, 453
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	15
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.