Rh6AG073800

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017412
Physical Location & Seq
Forward (+)
10503460 .. 10503777
318 bp
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UTR
Exon/CDS
Intron
Rh6AG073800.1

Sequence Viewer

Length: 318 bp
ATGAAAACAGAAAGGTCCATAGTGTACCTCGGCTCACTTCCAGATAATAATAAGTGGTACTTACCATTGTTTCACCACCTTTGTATACTAGAAAGAGTTGTCAAGAATGGCTCGGGTGCAAATCCGTTGTCAAGAAGTTACAAAAGGAGTTTCAATGGATTTGCTGTGAAGCTCACTGACCTTGAAAGGCAAAAGATTGCTAACAGGAACGAGGTGGTCTCTGTCTTTCCAAGCACAACTTTCCGACTTCAAACAACAAGATTGTGGGACTTCAACGGTCAAAATGAGAAAATCCATCGAAATGCCACAGTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

10.0

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 28 - 83 8.5e-12 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 85
AfaI GTAC 2 cut(s) 26, 59
AgsI TTSAA 4 cut(s) 154, 185, 251, 274
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 15
BccI CCATC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 28
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 278, 310
BstMAI GTCTC 1 cut(s) 223
BstZ17I GTATAC 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 25, 58
CviJI RGCY 3 cut(s) 33, 111, 172
CviKI_1 RGCY 3 cut(s) 33, 111, 172
CviQI GTAC 2 cut(s) 25, 58
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 112
FaiI YATR 2 cut(s) 20, 86
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 223, 255
FaqI GGGAC 1 cut(s) 281
FblI GTMKAC 1 cut(s) 85
FspBI CTAG 1 cut(s) 89
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 25, 86
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 3 cut(s) 41, 103, 132
Hpy8I GTNNAC 2 cut(s) 25, 86
HpyCH4III ACNGT 2 cut(s) 278, 310
HpyCH4V TGCA 1 cut(s) 119
LpnPI CCDG 2 cut(s) 54, 190
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 2 cut(s) 38, 205
MslI CAYNNNNRTG 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 9
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 2 cut(s) 26, 59
RsaNI GTAC 2 cut(s) 25, 58
RseI CAYNNNNRTG 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 15
SetI ASST 6 cut(s) 17, 30, 81, 174, 183, 216
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 300
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 2 cut(s) 278, 310
TaqI TCGA 1 cut(s) 298
TscAI CASTG 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.