Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003745.1

Orthogroup ID

OG0017412

Physical Location & Seq

Genomic Coordinates Reverse (-)

28840 .. 29662

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003745.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgaaaacagaaaggtccagagtgtacctcggctcacttccagataataataagtggtacttaccattgtctcaccacctttgtattctaaaaagagttgtcaagaatggctcgggtgcaaatccgttgtcaagaagttacaaaaggagtttcaatggatttgctgtgaagctcactgaccttgaaagacaaaagattgctaacaggaacgaggtggtctctgtctttccaagcacaactttccgacttcaaacaacaagattgtgggacttcaacggtcaaaatgagaaaatccatcgaaatgccacagtagtgattggtgtccttgacacaggaatctggcccgaatcgggtagcttcaaaaatgaaggtttcagtccggctccaagcagtggaaaggtgcttgtgcaggtggaaaaaacttcacttgcaacaacaagatcagcagtgtacctcaacagcagcagggaacgccctaaaggactagtacaaggtgctacaagaggtggagttccctttgcgagaattgctgcatataaagtctgcaatggcgaatggtgccgttcagaggatccgatagcaataggtgcttttcatgcaactgagaaagggatactaacaactaaaactgcaggcaacgatggttatagagctggttctgtaacaaagtgtggcaccatggttgctaactacagttgcagcaagagatcgtcggataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

240

Amino Acids

26.35

Weight (kDa)

9.95

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017412)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323441 RchiOBHm_Chr1g0324021 RchiOBHm_Chr6g0255051
rosa_laevigata	RLG00000014858
rosa_multiflora	Rmu_co8240835.1_g000001 Rmu_sc0003745.1_g000003 Rmu_ssc0000011.1_g000077
rosa_roxburghii	Rroxscaffold_4G00326540
rosa_rugosa	Rorug05G0556500
rosa_samantha	Rh1AG059500 Rh1DG061400 Rh6AG073800 Rh6BG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	2 cut(s)	558, 674
AccB7I	CCANNNNNTGG	1 cut(s)	392
AclWI	GGATC	2 cut(s)	566, 579
AfaI	GTAC	4 cut(s)	26, 59, 452, 489
AfiI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
AgsI	TTSAA	5 cut(s)	154, 185, 251, 274, 361
AhlI	ACTAGT	1 cut(s)	484
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	3 cut(s)	172, 357, 653
AluI	AGCT	3 cut(s)	172, 357, 653
Alw26I	GTCTC	2 cut(s)	75, 223
AlwI	GGATC	2 cut(s)	566, 579
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	462, 530, 699
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	2 cut(s)	15, 342
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	2 cut(s)	558, 674
BbvI	GCAGC	3 cut(s)	474, 517, 711
BccI	CCATC	2 cut(s)	303, 635
BceAI	ACGGC	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	75, 223
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	2 cut(s)	630, 691
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	3 cut(s)	463, 531, 700
BlsI	GCNGC	3 cut(s)	464, 532, 701
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	15, 342
BmiI	GGNNCC	4 cut(s)	384, 560, 573, 676
BplI	GAGNNNNNCTC	4 cut(s)	12, 44, 203, 235
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	28, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 392, 568
Bse3DI	GCAATG	1 cut(s)	553
BseDI	CCNNGG	2 cut(s)	28, 678
BseLI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	594
BseXI	GCAGC	3 cut(s)	474, 517, 711
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	2 cut(s)	558, 674
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
BsmAI	GTCTC	2 cut(s)	75, 223
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	440, 571, 707
Bsp19I	CCATGG	1 cut(s)	678
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	384, 560, 573, 676
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	2 cut(s)	566, 579
BspT107I	GGYRCC	2 cut(s)	558, 674
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	28, 678
BssMI	GATC	3 cut(s)	440, 571, 707
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	278, 310, 695
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	678
BstKTI	GATC	3 cut(s)	443, 574, 710
BstMAI	GTCTC	2 cut(s)	75, 223
BstMBI	GATC	3 cut(s)	440, 571, 707
BstMWI	GCNNNNNNNGC	5 cut(s)	471, 527, 558, 587, 596
BstSFI	CTRYAG	2 cut(s)	630, 691
BstV1I	GCAGC	3 cut(s)	474, 517, 711
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	678
BtsI	GCAGTG	2 cut(s)	397, 453
BtsIMutI	CAGTG	3 cut(s)	174, 397, 453
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	15, 342
Csp6I	GTAC	4 cut(s)	25, 58, 451, 488
CviAII	CATG	2 cut(s)	596, 679
CviJI	RGCY	7 cut(s)	33, 111, 172, 343, 357, 383, 653
CviKI_1	RGCY	7 cut(s)	33, 111, 172, 343, 357, 383, 653
CviQI	GTAC	4 cut(s)	25, 58, 451, 488
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	3 cut(s)	442, 573, 709
DpnII	GATC	3 cut(s)	440, 571, 707
Eco130I	CCWWGG	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	2 cut(s)	599, 682
FaiI	YATR	5 cut(s)	535, 537, 597, 648, 680
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 223, 255
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	595, 678
Fnu4HI	GCNGC	3 cut(s)	463, 531, 700
Fsp4HI	GCNGC	3 cut(s)	463, 531, 700
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	3 cut(s)	463, 531, 700
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	2 cut(s)	599, 682
HinfI	GANTC	2 cut(s)	336, 347
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	25, 451
Hpy188I	TCNGA	4 cut(s)	245, 568, 576, 715
Hpy188III	TCNNGA	4 cut(s)	18, 41, 103, 132
Hpy8I	GTNNAC	2 cut(s)	25, 451
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	3 cut(s)	278, 310, 695
HpyCH4V	TGCA	8 cut(s)	119, 409, 431, 533, 546, 599, 632, 699
HpyF10VI	GCNNNNNNNGC	5 cut(s)	471, 527, 558, 587, 596
HpyF3I	CTNAG	1 cut(s)	603
Hsp92II	CATG	2 cut(s)	599, 682
Kzo9I	GATC	3 cut(s)	440, 571, 707
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	474, 517, 711
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	137, 661
MalI	GATC	3 cut(s)	442, 573, 709
MboI	GATC	3 cut(s)	440, 571, 707
MflI	RGATCY	1 cut(s)	571
MluCI	AATT	2 cut(s)	525, 718
MmeI	TCCRAC	2 cut(s)	268, 693
MnlI	CCTC	5 cut(s)	38, 205, 464, 497, 562
MslI	CAYNNNNRTG	2 cut(s)	300, 311
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	5 cut(s)	471, 527, 558, 587, 596
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	440, 571, 707
NlaIII	CATG	2 cut(s)	599, 682
NlaIV	GGNNCC	4 cut(s)	384, 560, 573, 676
NmeAIII	GCCGAG	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	336, 347
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	464, 532, 701
PspN4I	GGNNCC	4 cut(s)	384, 560, 573, 676
PspPI	GGNCC	2 cut(s)	15, 342
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	4 cut(s)	26, 59, 452, 489
RsaNI	GTAC	4 cut(s)	25, 58, 451, 488
RseI	CAYNNNNRTG	2 cut(s)	300, 311
SatI	GCNGC	3 cut(s)	463, 531, 700
Sau3AI	GATC	3 cut(s)	440, 571, 707
Sau96I	GGNCC	2 cut(s)	15, 342
SfcI	CTRYAG	2 cut(s)	630, 691
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	300, 311
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	2 cut(s)	525, 718
SspMI	CTAG	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	3 cut(s)	278, 310, 695
TaqI	TCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	525, 718
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	336, 347
TscAI	CASTG	3 cut(s)	181, 397, 453
TseI	GCWGC	3 cut(s)	462, 530, 699
TspDTI	ATGAA	3 cut(s)	17, 381, 584
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	3 cut(s)	181, 397, 453
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	15
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.