Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017412

Physical Location & Seq

Genomic Coordinates Forward (+)

58741058 .. 58742545

Gene Structure 1488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTGCGCCCCGGCTAGTGAAATCTCCGGGGTTCTTTTGAAGACCGGAATGGGTCGACGGATGGGCGGACCAAAGAGGGCAAGAGAGTCGTCGGGATGGAATCTCGAGGTGAGGGACCCGGTCCGGCATGATGGTTGGGAAGTCCGAGTAGCGAGAGGTCTGCGGACGTTGGTGTGGATGAAACGGTGGGCATTGATGCTGGTTCCCCAAGTAAGACAGGTCAAGGGACTCCCCGACGACCGCATCACGGGGTGCTTGCATGCTGCGCACGCTCAAAAGAGAGTGTTTGCAACCGGACTAGTTTTGGAGCCAAATAGGGCGCTCTTGTTCTCTTATATTTTCCCAATTCTCATGCTTAATATGAGCTTGTTAGTTTGTAGAGCCATTGATGAAAACACAAAGGTCCATATAGTATACATGGGCTCACTTCCCGCTAACCATTCGTATTCACCATTGTCTCACCACCTTAGTATGTTAGAAAGAGTTGTCAAGAATGGTTCAAATCTCCGACGAGAAGTCACAAAAGGAGTTTCAATGGATTTGCTGCCAAGCTCACCGACAATGAAAGATATGCGCTTGCTAACATGTAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

198

Amino Acids

22.31

Weight (kDa)

10.45

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017412)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323441 RchiOBHm_Chr1g0324021 RchiOBHm_Chr6g0255051
rosa_laevigata	RLG00000014858
rosa_multiflora	Rmu_co8240835.1_g000001 Rmu_sc0003745.1_g000003 Rmu_ssc0000011.1_g000077
rosa_roxburghii	Rroxscaffold_4G00326540
rosa_rugosa	Rorug05G0556500
rosa_samantha	Rh1AG059500 Rh1DG061400 Rh6AG073800 Rh6BG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
AccI	GTMKAC	2 cut(s)	55, 414
AciI	CCGC	4 cut(s)	66, 163, 241, 432
AdeI	CACNNNGTG	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	40, 501, 534
AhdI	GACNNNNNGTC	1 cut(s)	515
AhlI	ACTAGT	1 cut(s)	298
AluBI	AGCT	2 cut(s)	366, 552
AluI	AGCT	2 cut(s)	366, 552
Alw26I	GTCTC	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	263, 544
AspLEI	GCGC	4 cut(s)	8, 268, 322, 576
AspS9I	GGNCC	4 cut(s)	68, 115, 121, 403
AsuC2I	CCSGG	3 cut(s)	11, 28, 119
AsuHPI	GGTGA	4 cut(s)	121, 441, 452, 546
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	4 cut(s)	68, 115, 121, 403
BanII	GRGCYC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	250, 531
BccI	CCATC	3 cut(s)	55, 90, 125
BcgI	CGANNNNNNTGC	4 cut(s)	69, 103, 142, 176
BcnI	CCSGG	3 cut(s)	11, 28, 119
BcoDI	GTCTC	1 cut(s)	462
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	2 cut(s)	15, 299
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	2 cut(s)	264, 545
BlsI	GCNGC	2 cut(s)	265, 546
Bme1390I	CCNGG	3 cut(s)	11, 28, 119
Bme18I	GGWCC	4 cut(s)	68, 115, 121, 403
BmeRI	GACNNNNNGTC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	68, 115, 121, 403
BmiI	GGNNCC	4 cut(s)	116, 117, 204, 309
BmrFI	CCNGG	3 cut(s)	11, 28, 119
BmsI	GCATC	2 cut(s)	186, 252
BpiI	GAAGAC	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	11, 28, 119
BsaJI	CCNNGG	2 cut(s)	9, 27
BsaWI	WCCGGW	2 cut(s)	44, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	9, 27
BseGI	GGATG	3 cut(s)	66, 101, 183
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	250, 531
Bsh1285I	CGRYCG	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	6 cut(s)	11, 27, 45, 119, 124, 294
BslFI	GGGAC	2 cut(s)	128, 240
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	2 cut(s)	128, 240
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	425
BspACI	CCGC	4 cut(s)	66, 163, 241, 432
BspLI	GGNNCC	4 cut(s)	116, 117, 204, 309
BssECI	CCNNGG	2 cut(s)	9, 27
BssNAI	GTATAC	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	186
BstC8I	GCNNGC	4 cut(s)	257, 261, 270, 578
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	66, 101, 183
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	4 cut(s)	8, 268, 322, 576
BstMAI	GTCTC	1 cut(s)	462
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 269
BstNSI	RCATGY	2 cut(s)	263, 588
BstSCI	CCNGG	3 cut(s)	9, 26, 117
BstV1I	GCAGC	2 cut(s)	250, 531
BstV2I	GAAGAC	1 cut(s)	47
BstZ17I	GTATAC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	66, 101, 183
Cac8I	GCNNGC	4 cut(s)	257, 261, 270, 578
CfoI	GCGC	4 cut(s)	8, 268, 322, 576
Cfr13I	GGNCC	4 cut(s)	68, 115, 121, 403
CpoI	CGGWCCG	1 cut(s)	121
CspI	CGGWCCG	1 cut(s)	121
CviAII	CATG	5 cut(s)	128, 260, 352, 418, 585
CviJI	RGCY	6 cut(s)	14, 310, 366, 383, 423, 552
CviKI_1	RGCY	6 cut(s)	14, 310, 366, 383, 423, 552
DdeI	CTNAG	1 cut(s)	467
DraIII	CACNNNGTG	1 cut(s)	252
DriI	GACNNNNNGTC	1 cut(s)	515
Eam1105I	GACNNNNNGTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	4 cut(s)	68, 115, 121, 403
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	425
FaeI	CATG	5 cut(s)	131, 263, 355, 421, 588
FaqI	GGGAC	2 cut(s)	128, 240
FatI	CATG	5 cut(s)	127, 259, 351, 417, 584
FauI	CCCGC	1 cut(s)	439
FblI	GTMKAC	2 cut(s)	55, 414
Fnu4HI	GCNGC	2 cut(s)	264, 545
FokI	GGATG	3 cut(s)	73, 108, 190
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	264, 545
FspBI	CTAG	2 cut(s)	15, 299
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	4 cut(s)	7, 267, 321, 575
GluI	GCNGC	2 cut(s)	264, 545
HaeII	RGCGCY	1 cut(s)	323
HapII	CCGG	6 cut(s)	11, 27, 45, 119, 124, 294
HhaI	GCGC	4 cut(s)	8, 268, 322, 576
Hin1II	CATG	5 cut(s)	131, 263, 355, 421, 588
Hin6I	GCGC	4 cut(s)	6, 266, 320, 574
HinP1I	GCGC	4 cut(s)	6, 266, 320, 574
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HinfI	GANTC	3 cut(s)	86, 100, 228
HpaII	CCGG	6 cut(s)	11, 27, 45, 119, 124, 294
HphI	GGTGA	4 cut(s)	121, 441, 452, 546
Hpy166II	GTNNAC	2 cut(s)	56, 415
Hpy188I	TCNGA	2 cut(s)	146, 509
Hpy188III	TCNNGA	3 cut(s)	93, 104, 490
Hpy8I	GTNNAC	2 cut(s)	56, 415
Hpy99I	CGWCG	4 cut(s)	60, 94, 239, 513
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	259, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 269
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	131, 263, 355, 421, 588
HspAI	GCGC	4 cut(s)	6, 266, 320, 574
KflI	GGGWCCC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	8 cut(s)	24, 40, 58, 132, 137, 185, 203, 307
Lsp1109I	GCAGC	2 cut(s)	250, 531
LweI	GCATC	2 cut(s)	186, 252
MaeI	CTAG	2 cut(s)	15, 299
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	517
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	95, 222
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	69, 100, 105, 149
MseI	TTAA	1 cut(s)	357
MspI	CCGG	6 cut(s)	11, 27, 45, 119, 124, 294
MspR9I	CCNGG	3 cut(s)	11, 28, 119
MwoI	GCNNNNNNNGC	2 cut(s)	265, 269
NciI	CCSGG	3 cut(s)	11, 28, 119
NlaIII	CATG	5 cut(s)	131, 263, 355, 421, 588
NlaIV	GGNNCC	4 cut(s)	116, 117, 204, 309
NmuCI	GTSAC	1 cut(s)	517
NsbI	TGCGCA	1 cut(s)	267
NspI	RCATGY	2 cut(s)	263, 588
PaeI	GCATGC	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	104
PciI	ACATGT	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	100
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	265, 546
PleI	GAGTC	2 cut(s)	94, 222
PpsI	GAGTC	2 cut(s)	94, 222
PpuMI	RGGWCCY	1 cut(s)	115
PscI	ACATGT	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	116, 117, 204, 309
PspPI	GGNCC	4 cut(s)	68, 115, 121, 403
PspPPI	RGGWCCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	119
Rsr2I	CGGWCCG	1 cut(s)	121
RsrII	CGGWCCG	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	264, 545
Sau96I	GGNCC	4 cut(s)	68, 115, 121, 403
SchI	GAGTC	2 cut(s)	95, 222
ScrFI	CCNGG	3 cut(s)	11, 28, 119
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	8 cut(s)	111, 160, 170, 222, 368, 405, 468, 554
SfaNI	GCATC	2 cut(s)	186, 252
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	4 cut(s)	68, 115, 121, 403
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	298
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	66, 163, 241, 432
SspMI	CTAG	2 cut(s)	15, 299
StyD4I	CCNGG	3 cut(s)	9, 26, 117
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	2 cut(s)	55, 105
TasI	AATT	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	263, 544
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	3 cut(s)	194, 405, 578
TspGWI	ACGGA	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	4 cut(s)	68, 115, 121, 403
XceI	RCATGY	2 cut(s)	263, 588
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	2 cut(s)	55, 414
XspI	CTAG	2 cut(s)	15, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.