Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017412

Physical Location & Seq

Genomic Coordinates Forward (+)

10321783 .. 10322598

Gene Structure 816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAAACAGAAAGGTCCAGAGTGTACCGCGGCTCACTTCCAGATAATAATAAGTGGTACTTACCATTGTCTCACCACCTTTGTATACTAGAAAGAGTTGTCAAGAATGGCTCGGGTGCAAATCCGTTGTCAAGAAGTTACAAAAGGAGTTTCAATGGATTTGCTGTGAAGCTCACTGACCTTGAAAGACAAAAGATTACTAACAGGAACGAGGTGGTCTCTGTCTTTCCAAGCACAACTTTCCGACTTCAAACAACAAGATTGTGGGACTTCAACGGTCAAAATGAGAAAATCCTTCGAAATGCCACGGTAGTGATTGGTGTCCTTGACACAGGAATCTGGCCCGAATCGGGTAGCTTCAAAAATGAAGCTTTCAGTCCGGCTCCAAGCAGTGGAAAGGTGCTTGTGCAGGTGGAAAAAACTTCACTTGCAACAACAAGATCAGCAGTGTACCTCAACGGCAGTAGGGAACGCCGTAAAGGACTAGTACAAGGTGCTACAAGAGGTGGAGTTCCCTTTGCGAGAATTGCTGCATATAAAGTCTGCAATGGCGAATGGTGCCGTTCAGAGGGTATCCTGAGTGCTTTTGACGATGCTATTGCTGATGGAGTTGACATCATTACTGTTTCACTTACTCACATACTTACACTACGTTTGAATAAAGATCCGATAGCAATAGGTGCTTTTCATGCAACTGAGAAAGGGATAGTAACAACTAAAACTGCAGGCAACGATGGTTATAGAGCTGGTTCTGTAACAAAGTGTGGCACCATGGTTGCTAACTACAGTTGCAGCAAGAGATCGTCGGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

271

Amino Acids

29.71

Weight (kDa)

9.82

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	28 - 83	2e-10	Peptidase inhibitor I9
Peptidase_S8	PF00082	103 - 247	3.3e-06	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017412)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323441 RchiOBHm_Chr1g0324021 RchiOBHm_Chr6g0255051
rosa_laevigata	RLG00000014858
rosa_multiflora	Rmu_co8240835.1_g000001 Rmu_sc0003745.1_g000003 Rmu_ssc0000011.1_g000077
rosa_roxburghii	Rroxscaffold_4G00326540
rosa_rugosa	Rorug05G0556500
rosa_samantha	Rh1AG059500 Rh1DG061400 Rh6AG073800 Rh6BG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	2 cut(s)	558, 767
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	85
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	28, 30
AclWI	GGATC	1 cut(s)	659
AfaI	GTAC	4 cut(s)	26, 59, 452, 489
AfiI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
AgsI	TTSAA	6 cut(s)	154, 185, 251, 274, 361, 658
AhlI	ACTAGT	1 cut(s)	484
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	172, 357, 371, 746
AluI	AGCT	4 cut(s)	172, 357, 371, 746
Alw26I	GTCTC	2 cut(s)	75, 223
AlwI	GGATC	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	530, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	2 cut(s)	15, 342
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	15
BanI	GGYRCC	2 cut(s)	558, 767
BbvI	GCAGC	2 cut(s)	517, 804
BccI	CCATC	2 cut(s)	599, 728
BceAI	ACGGC	3 cut(s)	459, 475, 546
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	2 cut(s)	75, 223
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	2 cut(s)	89, 485
BfmI	CTRYAG	2 cut(s)	723, 784
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	3 cut(s)	31, 531, 793
BlsI	GCNGC	3 cut(s)	32, 532, 794
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	15, 342
BmiI	GGNNCC	3 cut(s)	384, 560, 769
BmsI	GCATC	1 cut(s)	583
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
Bpu14I	TTCGAA	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	28, 306, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 392, 568
Bse3DI	GCAATG	1 cut(s)	553
BseDI	CCNNGG	3 cut(s)	28, 306, 771
BseLI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	569, 687
BseXI	GCAGC	2 cut(s)	517, 804
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	2 cut(s)	558, 767
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	350, 392, 568
BsmAI	GTCTC	2 cut(s)	75, 223
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	440, 664, 800
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	2 cut(s)	28, 30
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	570, 688
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	384, 560, 769
BspMAI	CTGCAG	1 cut(s)	727
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	659
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	2 cut(s)	558, 767
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	28, 306, 771
BssMI	GATC	3 cut(s)	440, 664, 800
BssNAI	GTATAC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	771
Bst1107I	GTATAC	1 cut(s)	86
Bst4CI	ACNGT	4 cut(s)	278, 310, 625, 788
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	2 cut(s)	578, 696
BstDSI	CCRYGG	3 cut(s)	28, 306, 771
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	443, 667, 803
BstMAI	GTCTC	2 cut(s)	75, 223
BstMBI	GATC	3 cut(s)	440, 664, 800
BstMWI	GCNNNNNNNGC	4 cut(s)	527, 558, 680, 689
BstSFI	CTRYAG	2 cut(s)	723, 784
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	517, 804
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BstZ17I	GTATAC	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	3 cut(s)	28, 306, 771
BtsI	GCAGTG	2 cut(s)	397, 453
BtsIMutI	CAGTG	3 cut(s)	174, 397, 453
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	15, 342
Cfr42I	CCGCGG	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	25, 58, 451, 488
CviAII	CATG	2 cut(s)	689, 772
CviJI	RGCY	8 cut(s)	33, 111, 172, 343, 357, 371, 383, 746
CviKI_1	RGCY	8 cut(s)	33, 111, 172, 343, 357, 371, 383, 746
CviQI	GTAC	4 cut(s)	25, 58, 451, 488
DdeI	CTNAG	2 cut(s)	578, 696
DpnI	GATC	3 cut(s)	442, 666, 802
DpnII	GATC	3 cut(s)	440, 664, 800
Eco130I	CCWWGG	1 cut(s)	771
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	771
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	2 cut(s)	692, 775
FaiI	YATR	7 cut(s)	86, 535, 537, 641, 690, 741, 773
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 223, 255
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	688, 771
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	31, 531, 793
Fsp4HI	GCNGC	3 cut(s)	31, 531, 793
FspBI	CTAG	2 cut(s)	89, 485
GluI	GCNGC	3 cut(s)	31, 531, 793
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	2 cut(s)	692, 775
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	336, 347
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	4 cut(s)	25, 86, 451, 613
Hpy188I	TCNGA	4 cut(s)	245, 568, 669, 808
Hpy188III	TCNNGA	5 cut(s)	18, 41, 103, 132, 577
Hpy8I	GTNNAC	4 cut(s)	25, 86, 451, 613
Hpy99I	CGWCG	1 cut(s)	808
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	4 cut(s)	278, 310, 625, 788
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	8 cut(s)	119, 409, 431, 533, 546, 692, 725, 792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	527, 558, 680, 689
HpyF3I	CTNAG	2 cut(s)	578, 696
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	2 cut(s)	692, 775
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	440, 664, 800
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	517, 804
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	89, 485
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	3 cut(s)	137, 709, 754
MalI	GATC	3 cut(s)	442, 666, 802
MboI	GATC	3 cut(s)	440, 664, 800
MflI	RGATCY	1 cut(s)	664
MluCI	AATT	2 cut(s)	525, 811
MmeI	TCCRAC	2 cut(s)	268, 786
MnlI	CCTC	4 cut(s)	205, 464, 497, 562
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	4 cut(s)	527, 558, 680, 689
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	3 cut(s)	440, 664, 800
NlaIII	CATG	2 cut(s)	692, 775
NlaIV	GGNNCC	3 cut(s)	384, 560, 769
NspV	TTCGAA	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	336, 347
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	32, 532, 794
PspN4I	GGNNCC	3 cut(s)	384, 560, 769
PspPI	GGNCC	2 cut(s)	15, 342
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	4 cut(s)	26, 59, 452, 489
RsaNI	GTAC	4 cut(s)	25, 58, 451, 488
RseI	CAYNNNNRTG	1 cut(s)	311
SacII	CCGCGG	1 cut(s)	31
SatI	GCNGC	3 cut(s)	31, 531, 793
Sau3AI	GATC	3 cut(s)	440, 664, 800
Sau96I	GGNCC	2 cut(s)	15, 342
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	2 cut(s)	723, 784
Sfr303I	CCGCGG	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	298
SgrBI	CCGCGG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	2 cut(s)	525, 811
SsiI	CCGC	2 cut(s)	28, 30
SspMI	CTAG	2 cut(s)	89, 485
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	4 cut(s)	278, 310, 625, 788
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	525, 811
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	336, 347
TscAI	CASTG	3 cut(s)	181, 397, 453
TseI	GCWGC	2 cut(s)	530, 792
TspDTI	ATGAA	3 cut(s)	17, 381, 677
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	3 cut(s)	181, 397, 453
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	2 cut(s)	89, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.